Input parameters:

  Query = FBpp0084418 (Len=909)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0084418, Len=909):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MANQLDASVKDDLKTQFVTREGTYRLLTLSEYSRPNRVGYSSNQSSPQVRVSMVTLPSPAQGKLGSDVGVGTPVGGGTAG 80  
WD40-rpts                  (__________________WD 1_________________)                           

Query       81 ANTTTTNGSSPGASPTGAAGASTAISNGGAGGDYSHSNHNSNSAGNNTVEARLGGGISMHSMMNGGVVDQNGVATNQVLG 160 
WD40-rpts                             (_____________WD 2_____________)                         

Query      161 GDRICFNFGRDLYVYSFRGAKKGTEMSKPIDKKFYKGTNPSCHDFNISSATPTGAPLLVGFTTGQIQLVSPHVGPREVRK 240 
WD40-rpts                                         (_______________WD 3______________)          

Query      241 LFNEERLIDKTKVTCLKWLPNSPHLFLAAHASGHLYLYNEELPCAATAPSYQPFKLGDGYTILTSKSKTTRNPLFKWVFS 320 
WD40-rpts                                      (______________WD 4______________)(_____________

Query      321 TDNCCVNEFCFSPCGSHLAVVSQDGFLRVFHYDTMELLGIARSYFGGFLCVCWSPDGKYIVVGGEDDLVTVWSLHERRVV 400 
WD40-rpts      _______WD 5___________________)   (_________________WD 6________________)       

Query      401 ARGQGHRSWVSVVAFDPYTTSYTNWDGGDFSDDENQMNEYSHSREARFSGDSTANGGFEGFDRNSTPVHADRNGPHSASF 480 
WD40-rpts                                   (__________________WD 7_________________)   (______

Query      481 RSDASSAEKLMSYRLGSVSQDTQICLWDITEDVLRHPLVLRQPANSERAYLNGGVDEEAEAEDGIKVIRPVAMSGQATGQ 560 
WD40-rpts      _________WD 8______________)   (__________________WD 9_________________)    (___

Query      561 QAESGSCSPTREAAGGGTGNGAGEHSNSSSSKFSTANCTISSQSSPDDCDTEAATPASTSSNAGAGSVAGAGAVASTKQN 640 
WD40-rpts      ______________WD10________________)                    (_________________WD11___

Query      641 NRNHGTGNSIKFPNCISATKSDSIDGGGGSGSGQRPSQTTSGYNSKTSNSSNKSSNSGSGFSAFNSLTQRLSNFSFLSSS 720 
WD40-rpts      _____________)                                                 (______________WD

Query      721 EKKGAGYEGSHSTAHRQHRKAMSMLKSYNQHNHTGGHNNHSQSNNSSSSNFGHSSTLDSNAAGAIGSSSTAHSFGSLKLS 800 
WD40-rpts      12_____________)     (_________________WD13________________)                    

Query      801 RSSHHSSLATAAHASGSAAGSGSGVSSFDPMQLIGTPACPRFDECPLLEPLVCKKIAHERLTALIFREDCFLTACQDGFI 880 
WD40-rpts                                                     (________________WD14____________

Query      881 YTWARPGHATHATQHLSPGQAAAPGGTVI 909 
WD40-rpts      ___)                         

14 WD40-repeats found in QUERY=FBpp0084418 (Len=909):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    13-53       3.42  256.07  0.02183       17.5%     11.04
  WD 2:  Seg  4   104-135      2.83  231.57  0.04613        5.0%     -10.64
  WD 3:  Seg  9   196-230      6.26  373.10  0.00058       20.0%     40.72
  WD 4:  Seg 16   273-306      3.68  266.53  0.01583       12.5%     21.63
  WD 5:  Seg 20   307-351      7.94  442.85  6.7e-05       27.5%     57.60
  WD 6:  Seg 24   355-393      9.49  506.80  9.2e-06       37.5%     54.30
  WD 7:  Seg 30   430-470      4.29  291.78  0.00726       15.0%     16.55
  WD 8:  Seg 34   474-508      5.24  331.02  0.00215       25.0%     42.72
  WD 9:  Seg 37   512-552      6.10  366.54  0.00071       15.0%     46.66
  WD10:  Seg 41   557-595      5.37  336.53  0.00181       15.0%     11.26
  WD11:  Seg 42   616-654      4.08  283.10  0.00949       10.0%     -8.59
  WD12:  Seg 44   704-736      4.36  294.92  0.00659       12.5%     18.19
  WD13:  Seg 46   742-780      5.15  327.29  0.00242       10.0%     -3.14
  WD14:  Seg 48   848-884      2.81  230.80  0.04722       22.5%     41.74

Multiple sequence alignment of 14 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   13-53     LKT-----QFVTREGTYRLLTLSEYSRPNRVGYSS--NQSSP--QVRVSM
   WD 2  104-135    -------------AISNGGAGGDYSH-SNHNSNSA--GNNTV--EARLGG
   WD 3  196-230    KG----------TNPSCHDFNISSAT-PTGAPLLV--GFTTG--QIQLVS
   WD 4  273-306    ----------GHLYLYNEELPCAATA-PSYQPFKL--GD-GY--TILTSK
   WD 5  307-351    SKTTRNPLFKWVFSTDNCCVNEFCFS-PCGSHLAV--VSQDG--FLRVFH
   WD 6  355-393    -ME-----LLGIARSYFGGFLCVCWS-PDGKYIVV--GGEDD--LVTVWS
   WD 7  430-470    -FS-----DDENQMNEYSHSREARFS-GDSTANGGFEGFDRN--STPVHA
   WD 8  474-508    -GP-----HSASFRSDASSA----EK-LMSYRLGS--VSQDT--QICLWD
   WD 9  512-552    -DV-----LRHPLVLRQPANSERAYL-NGGVDEEA--EAEDGIKVIRPVA
   WD10  557-595    -AT-----GQQAESGSCSPTREAAGG-GTGNGAGE--HSNSS--SSKFST
   WD11  616-654    -PA-----STSSNAGAGSVAGAGAVA-STKQNNRN--HGTGN--SIKFPN
   WD12  704-736    ------------FNSLTQRLSNFSFL-SSSEKKGA--GYEGS--HSTAHR
   WD13  742-780    -MS-----MLKSYNQHNHTGGHNNHS-QSNNSSSS--NFGHS--STLDSN
   WD14  848-884    -LE-----PLVCKKIAHERLTALIFR-EDC--FLT--ACQDG--FIYTWA

   WD40 Template    TGE-----CLRTLSGHTSGVTSVSFS-PDGKRLVS--GSEDG--TIKVWD