Input parameters:

  Query = FBpp0084724 (Len=621)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0084724, Len=621):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MERYLSRRESGFHIHRSDDNSLMRRIYSSMNMFNSYHANCWPTDAGRTGAIFNLEFNADGNVVVAATERKCVLVFDAITQ 80  
WD40-rpts      (______________WD 1______________)   (_________________WD 2________________)    

Query       81 KEIFKVPDAHTDSVNCIKFFDERLFATGSDDFTVALWDLRNMKQKLRVLHGHSNWVKNIEYSSKDKLLVSSGFDGSIFTW 160 
WD40-rpts       (________________WD 3_______________)    (_________________WD 4________________

Query      161 DINSQTEQGLISQRVFHASGLMRCRISPTGDKLVLCTSGGYIMIIHHLDLTTLHKDLCGFRPGIYRLMQLGEQYIPQAAK 240 
WD40-rpts      )(____________________WD 5___________________)     (________________WD 6________

Query      241 YDHVFSKRQKKNRVELVTDFPENNDAEMIMALQIHPHCCCMLTRNVSCDEQSEWTCIHDINEEPVRSEDEQDEVEPQPKR 320 
WD40-rpts      ________)(____________________WD 7____________________)                         

Query      321 KRVSTTLASRSSLNESQDQDTVGLTPRQARRPLRVSSVQVFQLDNSGAGRGASDNPSVLTRSDSFIPDIWAAEVTVQERA 400 
WD40-rpts             (_____________________________WD 8_____________________________)   (_____

Query      401 IRQNRARVSNNHVSGYNFVYAISSGVLPLRQLGANSLMGSSTSPRPLTTPPPTESNQSSSSSSSSSSSSSSSSSSNNSDT 480 
WD40-rpts      ____________WD 9________________)(________________WD10________________)         

Query      481 TVRLEIGNRLRLRSFNSPVTTPTFKENGHSILVNAKKLLYYAAETNTKPGFIKEPGFSADGRVVCSPYGNGVRLFGYSED 560 
WD40-rpts          (_________________WD11_________________)(_____________WD12_____________)    

Query      561 CCDYPKCQAFEEVKSKPRKLVELAKITEHQDVVLCAKFSPREPLLVTGCNGGEVTWYRPNL 621 
WD40-rpts                         (_________________WD13________________)   

13 WD40-repeats found in QUERY=FBpp0084724 (Len=621):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-34       4.93  318.28  0.00319        5.0%     38.54
  WD 2:  Seg  4    38-76       9.36  501.45  1.1e-05       27.5%     52.84
  WD 3:  Seg  8    82-118      7.73  433.91  8.8e-05       30.0%     42.42
  WD 4:  Seg 11   123-161      9.65  513.32  7.5e-06       40.0%     50.96
  WD 5:  Seg 15   162-206      8.01  445.37  6.2e-05       25.0%     49.63
  WD 6:  Seg 18   212-249      7.31  416.78  0.00015       12.5%     45.33
  WD 7:  Seg 21   250-295      5.01  321.46  0.00289        7.5%     46.92
  WD 8:  Seg 26   328-391      4.60  304.60  0.00488        7.5%      7.56
  WD 9:  Seg 28   395-433      6.01  362.75  0.00080       10.0%     25.86
  WD10:  Seg 32   434-471      3.16  245.26  0.03041        7.5%     17.46
  WD11:  Seg 36   485-524      5.37  336.43  0.00182       15.0%     36.69
  WD12:  Seg 40   525-556      4.34  294.11  0.00675       12.5%     34.51
  WD13:  Seg 42   580-618      6.33  375.99  0.00053       25.0%     44.46

Multiple sequence alignment of 13 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-34     ---------------------------------ME-----RYLSRRESGFHIHRSDDNS-LMRRI--YSSMNMFN
   WD 2   38-76     -A------------------------N-----CWP-----TDAGRTGAIFNLEFNADGN-VVVAATERKCVLVFD
   WD 3   82-118    --------------------------E-----IFK-----VPDAHTDSVNCIKFF-DER-LFATGSDDFTVALWD
   WD 4  123-161    -K------------------------Q-----KLR-----VLHGHSNWVKNIEYSSKDK-LLVSSGFDGSIFTWD
   WD 5  162-206    IN------------------------SQTEQGLIS-----QRVFHASGLMRCRISPTGD-KLVLCTSGGYIMIIH
   WD 6  212-249    T-------------------------------LHK-----DLCGFRPGIYRLMQLGEQY-IPQAAKYDHVFSKRQ
   WD 7  250-295    KK------------------------N-----RVELVTDFPENNDAEMIMALQIHPHCCCMLTRNVSCDEQSEWT
   WD 8  328-391    ASRSSLNESQDQDTVGLTPRQARRPLR-----VSS-----VQVFQLDNSGAGRGASDNP-SVLTRSDSFIPDIWA
   WD 9  395-433    -T------------------------V-----QER-----AIRQNRARVSNNHVSGYNF-VYAISSGVLPLRQLG
   WD10  434-471    AN------------------------S-----LM-------GSSTSPRPLTTPPPTESN-QSSSSSSSSSSSSSS
   WD11  485-524    EI------------------------G-----NRL-----RLRSFNSPVTTPTFKENGH-SILVNAKKLLYYAAE
   WD12  525-556    -----------------------------------------TNTKPGFIKEPGFSADGR-VVCSPY-GNGVRLFG
   WD13  580-618    -L------------------------V-----ELA-----KITEHQDVVLCAKFSPREP-LLVTGCNGGEVTWYR

   WD40 Template    TG------------------------E-----CLR-----TLSGHTSGVTSVSFSPDGK-RLVSGSEDGTIKVWD