Input parameters:
Query = FBpp0084895 (Len=419)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (FBpp0084895, Len=419):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MQYKSKDADKLNEENESIIRKRSAKLKRDLEDAVREPSSSSNAASSPGAASLQRNSSPAQFVGGLIGDEDFDEAAINGAM 80
WD40-rpts (
Query 81 EAIGLDDNEYISARFTAGEIAENSRASIDTLKATGYLGQANPTKILMKFEAHENESHAVRWSPVERMVATGGADRKVKLW 160
WD40-rpts _________________WD 1_________________) (_________________WD 2________________
Query 161 DIGKNSTEPRAVLSGSSAGINSVDFDSTGAYILGTSNDYGARVWTVMDNRLRHTLTGHSGKVMAAKYVQEPIKVVTGSHD 240
WD40-rpts ) (_________________WD 3________________) (_________________WD 4__________
Query 241 RTLKIWDLRSIACIETKFAGSSCNDLVTTDSLGSTIISGHYDKKIRFWDIRTEKQADDVLMPAKITSLDLSKDCNYLICS 320
WD40-rpts ______) (_________________WD 5________________) (_________________WD 6_______
Query 321 VRDDTIKLLDLRKNQVISTFTNEHFKISCDFARASFNSSGLKIACGSADGAIYIWNVNGFLEATLKGHSTAVNAVSWSPN 400
WD40-rpts _________) (_______________WD 7______________) (_________________WD 8
Query 401 NNMLASVGKNKRCTIYSES 419
WD40-rpts ________________)
8 WD40-repeats found in QUERY=FBpp0084895 (Len=419):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 80-119 5.21 329.79 0.00224 7.5% 7.35
WD 2: Seg 4 123-161 9.13 491.99 1.5e-05 25.0% 51.64
WD 3: Seg 8 167-205 9.49 506.63 9.2e-06 32.5% 53.16
WD 4: Seg 12 209-247 10.18 535.01 3.8e-06 32.5% 55.93
WD 5: Seg 16 251-289 9.21 495.03 1.3e-05 27.5% 54.95
WD 6: Seg 20 292-330 7.68 432.10 9.3e-05 27.5% 53.18
WD 7: Seg 25 342-376 6.28 374.14 0.00056 22.5% 35.06
WD 8: Seg 29 379-417 9.63 512.49 7.7e-06 30.0% 57.14
Multiple sequence alignment of 8 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 80-119 MEAIGLDDNEYISARFTAGEIAENSRASIDTLKATGYLGQ
WD 2 123-161 -TKILMKFEAHENESHAVRWSPVERMVATGGADRKVKLWD
WD 3 167-205 -TEPRAVLSGSSAGINSVDFDSTGAYILGTSNDYGARVWT
WD 4 209-247 -NRLRHTLTGHSGKVMAAKYVQEPIKVVTGSHDRTLKIWD
WD 5 251-289 -IACIETKFAGSSCNDLVTTDSLGSTIISGHYDKKIRFWD
WD 6 292-330 -TEKQADDVLMPAKITSLDLSKDCNYLICSVRDDTIKLLD
WD 7 342-376 -----NEHFKISCDFARASFNSSGLKIACGSADGAIYIWN
WD 8 379-417 -GFLEATLKGHSTAVNAVSWSPNNNMLASVGKNKRCTIYS
WD40 Template TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD