Input parameters:

  Query = FBpp0084896 (Len=445)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0084896, Len=445):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKKRLLKSFSFSYNSQDENRRLLERLMQYKSKDADKLNEENESIIRKRSAKLKRDLEDAVREPSSSSNAASSPGAASLQR 80  
WD40-rpts                                                                                      

Query       81 NSSPAQFVGGLIGDEDFDEAAINGAMEAIGLDDNEYISARFTAGEIAENSRASIDTLKATGYLGQANPTKILMKFEAHEN 160 
WD40-rpts                            (___________________WD 1__________________)   (___________

Query      161 ESHAVRWSPVERMVATGGADRKVKLWDIGKNSTEPRAVLSGSSAGINSVDFDSTGAYILGTSNDYGARVWTVMDNRLRHT 240 
WD40-rpts      ______WD 2________________)     (_________________WD 3________________)   (_____

Query      241 LTGHSGKVMAAKYVQEPIKVVTGSHDRTLKIWDLRSIACIETKFAGSSCNDLVTTDSLGSTIISGHYDKKIRFWDIRTEK 320 
WD40-rpts      ____________WD 4________________)   (_________________WD 5________________)  (__

Query      321 QADDVLMPAKITSLDLSKDCNYLICSVRDDTIKLLDLRKNQVISTFTNEHFKISCDFARASFNSSGLKIACGSADGAIYI 400 
WD40-rpts      _______________WD 6________________)           (_______________WD 7_____________

Query      401 WNVNGFLEATLKGHSTAVNAVSWSPNNNMLASVGKNKRCTIYSES 445 
WD40-rpts      _)  (_________________WD 8________________)  

8 WD40-repeats found in QUERY=FBpp0084896 (Len=445):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1   103-145      4.92  317.86  0.00324       10.0%     24.81
  WD 2:  Seg  5   149-187      9.45  505.02  9.7e-06       25.0%     50.90
  WD 3:  Seg  9   193-231      9.58  510.43  8.2e-06       32.5%     52.57
  WD 4:  Seg 13   235-273     10.19  535.55  3.8e-06       32.5%     56.09
  WD 5:  Seg 17   277-315      9.29  498.34  1.2e-05       27.5%     54.57
  WD 6:  Seg 21   318-356      7.71  433.09  9.1e-05       27.5%     53.05
  WD 7:  Seg 26   368-402      6.32  375.61  0.00054       22.5%     35.48
  WD 8:  Seg 30   405-443      9.58  510.45  8.2e-06       30.0%     57.15

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  103-145    NGAMEAIGLDDNEYISARFTAGEIAENSRASIDTLKATGYLGQ
   WD 2  149-187    -TKILM---KFEAHENESHAVRWSPVERMVATGGADRKVKLWD
   WD 3  193-231    -TEPRA---VLSGSSAGINSVDFDSTGAYILGTSNDYGARVWT
   WD 4  235-273    -NRLRH---TLTGHSGKVMAAKYVQEPIKVVTGSHDRTLKIWD
   WD 5  277-315    -IACIE---TKFAGSSCNDLVTTDSLGSTIISGHYDKKIRFWD
   WD 6  318-356    -TEKQA---DDVLMPAKITSLDLSKDCNYLICSVRDDTIKLLD
   WD 7  368-402    -----N---EHFKISCDFARASFNSSGLKIACGSADGAIYIWN
   WD 8  405-443    -GFLEA---TLKGHSTAVNAVSWSPNNNMLASVGKNKRCTIYS

   WD40 Template    TGECLR---TLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD