Input parameters:

  Query = FBpp0085224 (Len=424)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0085224, Len=424):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRDEILDPSNLVKNREILYRLMISQLMYDGLEKFAMELSMLVKADQCAPSERLLHVMIAGMQTLSDKDKTNSDDVLPGID 80  
WD40-rpts                                 (______________WD 1_____________)                    

Query       81 LEFEPEASALAPEPHSYETAYVTSHKQACRAGAFSCDGSLVATGSVDASIKILDVERMLAKSAPEDIEPGREQQGHPVIR 160 
WD40-rpts                     (_________________WD 2________________)                     (____

Query      161 TLYDHTDEVSYLEFHPKEHILASASRDGTVKLFDIAKPSVKKAHKVFTDCEPVLCLSFHPTGDYVAIGTEHNVLRVYDVA 240 
WD40-rpts      _____________WD 3________________)(___________________WD 4___________________)(_

Query      241 TTQCFVSAIPSQQHKAGVTCVKYSPTGKLYATGSYDGDIKIWDGISGRCINTIAEAHGGAAICSLEFTRNGKYLLSSGMD 320 
WD40-rpts      ___________________WD 5___________________)   (__________________WD 6___________

Query      321 SLVYLWELCTSRPIQTYTGAGTTGKQEHQTEAVFNHTEDYVLFPDEATTSLCSWNSRNGCRLTLNSLGHNGPVRYITHSP 400 
WD40-rpts      ______)   (____________________WD 7___________________)(___________________WD 8_

Query      401 NGPAFLTCSDDFRARFWYRRANNQ 424 
WD40-rpts      _________________)      

8 WD40-repeats found in QUERY=FBpp0085224 (Len=424):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    28-60       6.02  363.45  0.00079        5.0%     28.35
  WD 2:  Seg  4    96-134      8.65  471.97  2.7e-05       27.5%     54.90
  WD 3:  Seg  8   156-194      8.75  476.06  2.4e-05       40.0%     54.98
  WD 4:  Seg 12   195-238      8.19  453.10  4.9e-05       22.5%     57.55
  WD 5:  Seg 16   239-283      9.38  502.08  1.1e-05       42.5%     44.76
  WD 6:  Seg 20   287-327      8.36  459.86  3.9e-05       30.0%     54.88
  WD 7:  Seg 24   331-375      6.48  382.38  0.00044       12.5%     52.26
  WD 8:  Seg 28   376-418      8.44  463.28  3.5e-05       22.5%     51.11

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   28-60     ----------------YDG------LEKF--AMELSMLVKADQCAPSERLLHVMIAG
   WD 2   96-134    -S----Y-----ETAYVTS------HKQA--CRAGAFSCDGSLVATGSVDASIKILD
   WD 3  156-194    -H----P-----VIRTLYD------HTDE--VSYLEFHPKEHILASASRDGTVKLFD
   WD 4  195-238    IAKPSVK-----KAHKVFT------DCEP--VLCLSFHPTGDYVAIGTEHNVLRVYD
   WD 5  239-283    VA----TTQCFVSAIPSQQ------HKAG--VTCVKYSPTGKLYATGSYDGDIKIWD
   WD 6  287-327    -G----R-----CINTIAE------AHGGAAICSLEFTRNGKYLLSSGMDSLVYLWE
   WD 7  331-375    -S----R-----PIQTYTGAGTTGKQEHQ--TEAVFNHTEDYVLFPDEATTSLCSWN
   WD 8  376-418    SR-NGCR-----LTLNSLG------HNGP--VRYITHSPNGPAFLTCSDDFRARFWY

   WD40 Template    TG----E-----CLRTLSG------HTSG--VTSVSFSPDGKRLVSGSEDGTIKVWD