Input parameters:
Query = FBpp0085359 (Len=419)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (FBpp0085359, Len=419):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MKWTTANTKHVNYTAKHELYVGTHTGSFKHLVPASEKTPYGQSNLSDLCALDKDSRVTSLAFGNDDQTEILLGRAKDAVE 80
WD40-rpts (_______________________WD 1____________________
Query 81 IHSFTEKGHSRNTVSFNAAPIVGLARYNDKLIAGIGNGEIQSLELEANDESEPVVIATGDQMDHLRQCAQVKSIVATGGK 160
WD40-rpts __) (________________WD 2_______________) (__________________WD 3________
Query 161 ERQNNLKVYDLNADGKQIFTSKNLPNDYLQLEVPVWDSDIGFVDGPSVLATCSRTGYVRIYDTRKQRRPVACFASEEHGM 240
WD40-rpts _________) (__________________WD 4__________________)(_________________
Query 241 SFTTLVAKGNFIYTGTTMGALKAFDTRRMKTHVHTYKGFTGGISDLHLDATGRFLSSASLDRYVRIHDSETTVLLYQCYV 320
WD40-rpts __WD 5__________________) (_________________WD 6________________)
Query 321 KSKATKILIRPFENEARVTEEPEEVADLQMDRNVSENKSVNATSVDNEYEDMFDQMPTVGDSDNESEEEMSNIKLSKADL 400
WD40-rpts
Query 401 KRRSSEKSLKNKKKKVVIS 419
WD40-rpts
6 WD40-repeats found in QUERY=FBpp0085359 (Len=419):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 4 33-83 5.43 339.00 0.00168 17.5% 49.79
WD 2: Seg 7 88-124 4.61 305.19 0.00479 17.5% 52.45
WD 3: Seg 11 130-170 5.25 331.42 0.00213 10.0% 50.56
WD 4: Seg 16 181-222 6.17 369.34 0.00066 12.5% 38.14
WD 5: Seg 19 223-265 8.21 453.92 4.7e-05 17.5% 55.15
WD 6: Seg 23 270-308 8.93 483.39 1.9e-05 25.0% 55.64
Multiple sequence alignment of 6 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 33-83 PA---SEKTPYGQSNLSDLCALDKDSR--VTSLAFGNDDQTEILLGRA--KDAVEIHS
WD 2 88-124 -G---H----------SRNTVSFNAAP--IVGL--A-RYNDKLIAGIG--NGEIQSLE
WD 3 130-170 -E---S----------EPVVIATGDQM--DHLRQCA-QVKSIVATGGKERQNNLKVYD
WD 4 181-222 SK---N----------LPNDYLQLEVPVWDSDIGFV-DGPSVLATCSR--TGYVRIYD
WD 5 223-265 TRKQRR----------PVACFASEEHG--MSFTTLV-AKGNFIYTGTT--MGALKAFD
WD 6 270-308 -K---T----------HVHTYKGFTGG--ISDLHLD-ATGRFLSSASL--DRYVRIHD
WD40 Template TG---E----------CLRTLSGHTSG--VTSVSFS-PDGKRLVSGSE--DGTIKVWD