Input parameters:

  Query = FBpp0085363 (Len=1276)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0085363, Len=1276):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAAATDVSARAAAAASSTSPRTAASNSSGLAGKPPGPAPSSAGVAGAAGASSTGLPASVSHFYYKHGLFLSSYPTCASSI 80  
WD40-rpts                                                                                      

Query       81 AFMAILLSCYPLINIPLPGTIPTKIVVPYETGSGSLSWHSLNTSSTTPQEPHPSGEPWPPEPQVLNSSTTDRSPPPLLPW 160 
WD40-rpts                                                                                      

Query      161 AQSSPAFFYVQQITLRTSVLPWTEGMQLMDAFRAPLHEVFKLLEIVRNHQSSENKRTLEHNCLHVDNVKRGTHGQLDQIF 240 
WD40-rpts                                                                                      

Query      241 PEYGCLLLSPANLWTQNSQNFTRDTNILNTIFQYHNLQKSKVSAAEMLFGLPMQDTGFKRYPLRARSRIIQYALTLFLKH 320 
WD40-rpts                                                                                      

Query      321 NDMEYLDTLKEKLLRHYPPLPLASASAEEPTTITYIFYPGEYRMWELVPYTVAFMLVFAYVYFSVRKIDVFRSRFLLALC 400 
WD40-rpts                                                                                      

Query      401 SVITTAGSLAMSLGLCFFFGLTISLQSKDIFPYLVILVGLENSLVITKSVVSMDETFDVKIRVAQALSKEGWHISKTLLT 480 
WD40-rpts                                                                                      

Query      481 EITILTIGLATFVPVIQEFCIFAIVGLLSDFMLQMLLFSTILAMNIKRTEYTAEAKHLPKMLLSCTQGAGRQDFRFFGAA 560 
WD40-rpts                                                                                      

Query      561 PALPPFVPGTFQRSQSHPKLCFADPASVSDRTSLVNGHSSPEQRIPKRIKIVNFWARTRFFQRAFMIWMIVWICSIVYNS 640 
WD40-rpts                                                                                      

Query      641 GYLEQLFSMQSNGTMTATLELQRRLQAGRGAVSSFFEGWQADGQRATSAPSGSGFSTPIKAPLAIDINETAEEMMRLRYP 720 
WD40-rpts                                                                                      

Query      721 SFDLNYFLSNFHWSTIMKQYNISLSGHYVTLLPTIRLSHAIAPELATLLRNPQEQLQQNFQWKALAAALDPLDFNDDDVR 800 
WD40-rpts                                                                                      

Query      801 RESPMVMAEGLPLVPKSPMEIFFAILLCCISIFVLCYTMVVFYRCICTRNYAEWRSSWHESEAPYKQTEQILEGVPTQIA 880 
WD40-rpts                                                                                     (

Query      881 GHKHRIECLVSDGAYIISCCLKGQIRVWDARSGEQLTSISRSDIQISQQRTDGQTLVRKLAVSPVWCLDYFDNLIAVGCA 960 
WD40-rpts      ____________WD 1____________)          (______________________WD 2______________

Query      961 NGRVELWESPAGLLKCAYQEDAKRNQGITHIHLNGDRVIVARLNGRLDFYRLETYYKGKQIDWGFTSAYRRTHVRTGSTG 1040
WD40-rpts      _______)   (_________________WD 3_________________)           (_________________

Query     1041 SLGLMLQQQRCQQEASQKTTKEEMKITLEGVRLAHQQPITCMQVVNDMVFTGSQDHTLKVYCLNKSDVEYTLHGHCGPVT 1120
WD40-rpts      _WD 4__________________)(________________WD 5________________)   (______________

Query     1121 CLFVDRWQPGTGGSGSQDGLLCVWDLFTGACMYNIQAHDGAVSCLACAPSYVISLGTDERICVWERFQGNLLTTINISNA 1200
WD40-rpts      ___WD 6_________________)   (________________WD 7_______________)   (___________

Query     1201 YSSLLMLTPSLLVTSKMGSLIVWDVRTGQPAREVKLDFANLQLCPKIMMLACDSVVCDYGNEIRVVRFPIVADKCH 1276
WD40-rpts      ____WD 8_______________)                                                    

8 WD40-repeats found in QUERY=FBpp0085363 (Len=1276):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 16   880-909      4.90  316.94  0.00333       25.0%     37.67
  WD 2:  Seg 20   920-968      4.21  288.62  0.00800       17.5%     38.44
  WD 3:  Seg 24   972-1011     3.99  279.28  0.01068       10.0%     40.06
  WD 4:  Seg 29  1023-1064     4.70  308.76  0.00429       17.5%     25.45
  WD 5:  Seg 33  1065-1102     7.13  409.26  0.00019       22.5%     47.50
  WD 6:  Seg 37  1106-1145     7.69  432.27  9.3e-05       35.0%     53.11
  WD 7:  Seg 41  1149-1185     6.91  400.22  0.00025       25.0%     51.54
  WD 8:  Seg 45  1189-1224     6.13  368.05  0.00068       25.0%     50.96

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  880-909    ----------AGHKHRIECL-----------VS-DGAYIISCCLKGQIRVWD
   WD 2  920-968    SR--SDIQISQQRTDGQTLVRKLAVSPVWCLDY-FDNLIAVGCANGRVELWE
   WD 3  972-1011   -G--LLKCAYQEDAKRNQGI--------THIHL-NGDRVIVARLNGRLDFYR
   WD 4 1023-1064   WGFTSAYRRTHVRTGSTGSL---------GLML-QQQRCQQEASQKTTKEEM
   WD 5 1065-1102   KI--TLEGVRLAHQQPITCM---------QVVN-DM--VFTGSQDHTLKVYC
   WD 6 1106-1145   -S--DVEYTLHGHCGPVTCL---------FVDRWQPGTGGSGSQDGLLCVWD
   WD 7 1149-1185   -G--ACMYNIQAHDGAVSCL---------ACAP-S--YVISLGTDERICVWE
   WD 8 1189-1224   -G--NLLTTINISNAYSSLL---------MLTP-S---LLVTSKMGSLIVWD

   WD40 Template    TG--ECLRTLSGHTSGVTSV---------SFSP-DGKRLVSGSEDGTIKVWD