Input parameters:

  Query = FBpp0085526 (Len=528)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0085526, Len=528):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSFRVVRSSKFRHVYGQALKREQCYDNIRVSKSSWDSTFCAVNPKFLAIIVESAGGGAFIVLPHNKVGRIAADHPLVGGH 80  
WD40-rpts                                                                            (_________

Query       81 KGPVLDIAWCPHNDNVIASGSEDCVVKVWQIPDGGLSRTLTEPVVDLVFHQRRVGLVLWHPSALNVLLTAGSDNQVVIWN 160 
WD40-rpts      ________WD 1_________________)          (_________________WD 2_________________)

Query      161 VGTGEILVHIDSHPDIVYSACFNWDGSKLVTTCKDKKIRIYDPRTAELESEAMCHEGSKATRAIFLRHGLIFTTGFNRSS 240 
WD40-rpts         (_________________WD 3________________)   (_________________WD 4_____________

Query      241 ERQYSLRAPDALNEPIVMVELDTSNGVMFPLYDADTNMIYLCGKGDSVIRYFEVTPEPPFVHYINTFQTTEPQRGIGLMP 320 
WD40-rpts      ____) (_____________________WD 5____________________)                           

Query      321 KRGCDVTTCEVAKFYRMNNNGLCQVISMTVPRKSDLFQEDLYPDTLAEDAAITAEEWIDGKDADPITFSLKGGYVSSSVN 400 
WD40-rpts                                                                                      

Query      401 KSLPAKKAGNILNKPRGDSASSGATSSSAGGGNFASGNNNEASEGGPPAAVLSEKDLRTIQDEIRKLKAIIVKQENRIRA 480 
WD40-rpts                                                                                      

Query      481 LEAKEDARNKNGSDAAPASAGAATSDGKASESANDHASTSAGTSKDED 528 
WD40-rpts                                                      

5 WD40-repeats found in QUERY=FBpp0085526 (Len=528):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    71-110      7.02  404.76  0.00022       30.0%     41.18
  WD 2:  Seg  8   121-160      5.96  360.75  0.00086       22.5%     51.82
  WD 3:  Seg 12   164-202      8.80  478.05  2.2e-05       35.0%     55.12
  WD 4:  Seg 16   206-245      4.11  284.47  0.00910       15.0%     55.87
  WD 5:  Seg 20   247-293      3.95  277.94  0.01113       15.0%     54.72

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   71-110    -A------ADHPLVGGHKGP-VLDIAWCPHND-NVI-ASGSEDCVVKVWQ
   WD 2  121-160    -T------EPVVDLVFHQRR-VGLVLWHP-SALNVL-LTAGSDNQVVIWN
   WD 3  164-202    -G------EILVHIDSHPDI-VYSACFNW-DG-SKL-VTTCKDKKIRIYD
   WD 4  206-245    -A------ELESEAMCHEGSKATRAIFLR-HG-LIF-TTGFNRSSERQYS
   WD 5  247-293    RAPDALNEPIVMVELDTSNG-VMFPLYDA-DT-NMIYLCGKGDSVIRYFE

   WD40 Template    TG------ECLRTLSGHTSG-VTSVSFSP-DG-KRL-VSGSEDGTIKVWD