Input parameters:

  Query = FBpp0085540 (Len=511)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0085540, Len=511):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGNQLAIQMNSDEDDDFDSSDNELGFNVINFTVNAMDLRSDYCSSEMPVIRGKPDLVKFQKTDMYKEIQASSGLVSNPNN 80  
WD40-rpts      (________________WD 1_______________)      (______________________WD 2__________

Query       81 RWNLVHALQQRENGLASPHSASFSKNQQRYISNLYIPNKKATRLMSLESKIFVTKFNRSGSKLLTACQDGFVRIYDGAKG 160 
WD40-rpts      ___________)                         (_________________WD 3________________)(___

Query      161 TYHLLNRIRARDVEWSIIDADFSPNGEHFAYSTWSRSLFIMPVNGGEDDCQWIDVNGLPSHRLAIFSLRYSPTGDKIIGG 240 
WD40-rpts      _________________WD 4____________________)         (_________________WD 5_______

Query      241 SNNSTVIVTDIRTRNTQILRTHRMPGKDVNSVCFLHDKDPNVIIAGCDDGLLKVYDLRTTFRSRDLSKSVASFIGHYDGI 320 
WD40-rpts      _________)     (__________________WD 6_________________)          (_____________

Query      321 TYIDSRNDGYHVLSNSKDQSIKIWDIRQPSNMRNRSRSRQQVDPTTWDYRWNRVPREFYNPHKPLEGDSSIMTYRGHRVT 400 
WD40-rpts      ____WD 7________________)   (_________________WD 8________________)(____________

Query      401 KTLLRAKFSPMEQTGQRYIYTGCATGRIIIYDVLTGKIQEAIEGHRTVIRDLDWHPDRSEIVSGSWDTHVHLNNFSRSNA 480 
WD40-rpts      ________WD 9___________________)   (_________________WD10________________)      

Query      481 NRPVKRSHSSDHDKKPLRRSRRLANRNVTPD 511 
WD40-rpts                                     

10 WD40-repeats found in QUERY=FBpp0085540 (Len=511):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-37       3.11  243.00  0.03258       15.0%     14.71
  WD 2:  Seg  3    44-92       4.84  314.68  0.00357       12.5%     31.23
  WD 3:  Seg  8   118-156      8.41  462.24  3.7e-05       20.0%     56.15
  WD 4:  Seg 12   157-202      6.40  378.96  0.00049       12.5%     57.61
  WD 5:  Seg 16   212-250      8.62  470.87  2.8e-05       27.5%     45.77
  WD 6:  Seg 19   256-296      7.76  435.08  8.5e-05       35.0%     55.85
  WD 7:  Seg 23   307-345      9.45  504.84  9.8e-06       32.5%     51.86
  WD 8:  Seg 27   349-387      7.20  411.97  0.00017       10.0%     27.70
  WD 9:  Seg 29   388-432      6.34  376.52  0.00052       27.5%     55.18
  WD10:  Seg 33   436-474      9.27  497.62  1.2e-05       25.0%     56.06

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-37     ------------MGN--Q--LAIQMNSD--ED----DDFDSSDN-ELGFNVINFTVNAM---------D
   WD 2   44-92     -S----SEMPVIRGK--P--DLVKFQKT--DM----YK-----EIQASSGLVSNPNNRWNLVHALQQRE
   WD 3  118-156    -N----KKATRLMSL--E--SKIFVTKF--NR----SG-----S-KLLTACQDGFVRIY---------D
   WD 4  157-202    GAKGTYHLLNRIRAR--DVEWSIIDADF--SP----NG-----E-HFAYSTWSRSLFIM---------P
   WD 5  212-250    -W----IDVNGLPSH--R--LAIFSLRY--SP----TG-----D-KIIGGSNNSTVIVT---------D
   WD 6  256-296    -T----QILRTHRMP--G--KDVNSVCFLHDK----DP-----N-VIIAGCDDGLLKVY---------D
   WD 7  307-345    -S----KSVASFIGH--Y--DGITYIDS--RN----DG-----Y-HVLSNSKDQSIKIW---------D
   WD 8  349-387    -P----SNMRNRSRS--R--QQVDPTTW--DY----RW-----N-RVPREFYNPHKPLE---------G
   WD 9  388-432    -D----SSIMTYRGHRVT--KTLLRAKF--SPMEQTGQ-----R-YIYTGCATGRIIIY---------D
   WD10  436-474    -G----KIQEAIEGH--R--TVIRDLDW--HP----DR-----S-EIVSGSWDTHVHLN---------N

   WD40 Template    TG----ECLRTLSGH--T--SGVTSVSF--SP----DG-----K-RLVSGSEDGTIKVW---------D