Input parameters:

  Query = FBpp0086097 (Len=690)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0086097, Len=690):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAKKKSEEHSGTDANDSDYQEEPNFDDPPGFVDNISDEDLLGDMLAQRPSEADGVESVVVVDNIPKVEPVRLEKLKLVIN 80  
WD40-rpts                                                                                      

Query       81 KLFSNYGEIVNVVYPVDEEGKTKGYAFMEYKQARQAEEAVKKLNNHRLDKNHTFAVNLFTDFQKYENIPEKWEPPTVQTF 160 
WD40-rpts                                                                                      

Query      161 KVQSDLYNFINDPDTYDQYCVAAETAPNCVQVGFWQNVLPEPFELETRERFTDTFVKWSPLGTYVVTFHKPGVAIWGGSS 240 
WD40-rpts                                             (________________WD 1________________)(__

Query      241 FQKIQKFPHPGTQFVEFSPCENYLVTYGPTPTGQKIIIWDIRTGAEKRSFVADGMSVLSMFRWSHDDKFVARMGENSIHI 320 
WD40-rpts      _________________WD 2__________________)   (_________________WD 3_______________

Query      321 YETPSFYLLDLKSIKIPGIRGFSWSPTDNVIAYWVEEQNQIPARVTLMEIPKKREIRNKNLFHVADCKLHWQKSGDYLCV 400 
WD40-rpts      _)   (___________________WD 4___________________)                               

Query      401 KVDRYSKLKKDKKDLDVKFLGMFYNFEIFHMREKEIPVDSVEIRELILAFAWEPVGNKFSIIHGETNSSNVSFYEVNKGV 480 
WD40-rpts                                                                                     (

Query      481 KPSLVKRLEKKSCTHLFWSPRGQFIVMANLTMGTFEFVDSTNDYIITASPDHFRASEVEWDPTGRYVVTGVSSWKVKEDT 560 
WD40-rpts      _________________WD 5_________________)  (____________________WD 6______________

Query      561 GFNMYTFQGRIIKRTILKNFVQFLWRPRPPTLLSEEKQKEIKKNLKKYYAAFEQKDRLRLTRASKELLEKRSQLRETFME 640 
WD40-rpts      _____)                                                                          

Query      641 YRNKRIAEWAEQKSRRIMLRGHVDTDNLETDEVDEEIVEFLVKEEVTLLE 690 
WD40-rpts                                                        

6 WD40-repeats found in QUERY=FBpp0086097 (Len=690):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  7   200-237      4.51  301.15  0.00543       22.5%     48.12
  WD 2:  Seg 11   238-280      5.40  337.65  0.00175       25.0%     51.20
  WD 3:  Seg 15   284-322      4.26  290.83  0.00747       15.0%     50.10
  WD 4:  Seg 19   326-369      3.84  273.38  0.01281       15.0%     42.96
  WD 5:  Seg 33   480-519      3.73  268.59  0.01485       20.0%     49.45
  WD 6:  Seg 37   522-566      3.67  266.10  0.01604       22.5%     54.41

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  200-237    -PEPFELETRERFTDTFVKWSPLGTYVV-----TFH------KPG-VAIWG
   WD 2  238-280    GSSFQKIQKFPHPGTQFVEFSPCENYLV-----TYG---PTPTGQKIIIWD
   WD 3  284-322    -GAEKRSFVADGMSVLSMFRWSHDDKFV-----ARM------GENSIHIYE
   WD 4  326-369    -FYLLDLKSIKIPGIRGFSWSPTDNVIAYWVEEQNQ------IPARVTLME
   WD 5  480-519    -VKPSLVKRLEKKSCTHLFWSPRGQFIV----MANL------TMGTFEFVD
   WD 6  522-566    -NDYIITASPDHFRASEVEWDPTGRYVV-----TGVSSWKVKEDTGFNMYT

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLV-----SGS------EDGTIKVWD