Input parameters:

  Query = FBpp0086122 (Len=1440)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0086122, Len=1440):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV 80  
WD40-rpts                                                                                      

Query       81 LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV 160 
WD40-rpts                                                                                      

Query      161 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 240 
WD40-rpts                                                                                      

Query      241 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 320 
WD40-rpts                                                                                      

Query      321 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV 400 
WD40-rpts                                                                                      

Query      401 VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH 480 
WD40-rpts                                                                                      

Query      481 PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTD 560 
WD40-rpts                                                                                      

Query      561 LLRIALMAEDEAIFEEAHKQVQRFDDRVWFTNHGRFHQHRQIINLGDNEGRHAVYLHNDFCLIALASGQILLTDVSLEGE 640 
WD40-rpts                                          (_________________WD 1________________)(____

Query      641 DTYLLRDESDSSDILRMAVFNQQKHLITLHCNGSVKLWSLWPDCPGRRHSGGSKQQLVNSVVKRFIGSYANLKIVAFYLN 720 
WD40-rpts      _______________WD 2___________________)                                         

Query      721 EDAGLPEANIQLHVAFINGDVSILNWDEQDQEFKLSHVPVLKTMQSGIRCFVQVLKRYYVVCTSNCTLTVWDLTNGSSNT 800 
WD40-rpts                               (_____________________WD 3____________________)        

Query      801 LELHVFNVENDTPLALDVFDERSKTATVLLIFKYSVWRLNFLPGLSVSLQSEAVQLPEGSFITCGKRSTDGRYLLLGTSE 880 
WD40-rpts                                                                                      

Query      881 GLIVYDLKISDPVLRSNVSEHIECVDIYELFDPVYKYIVLCGAKGKQVVHVHTLRSVSGSNSHQNREIAWVHSADEISVM 960 
WD40-rpts                                                                                      

Query      961 TKACLEPNVYLRSLMDMTRERTQLLAVDSKERIHLIKPAISRISEWSTITPTHAASNCKINAISAFNDEQIFVGYVDGVI 1040
WD40-rpts                                                                                      

Query     1041 IDVIHDTALPQQFIEEPIDYLKQVSPNILVASAHSAQKTVIFQLEKIDPLQPNDQWPLMMDVSTKYASLQEGQYIILFSD 1120
WD40-rpts         (_________________WD 4_________________)                                     

Query     1121 HGVCHLDIANPSAFVKPKDSEEYIVGFDLKNSLLFLAYENNIIDVFRLIFSCNQLRYEQICEEEIAQKAKISYLVATDDG 1200
WD40-rpts                                            (__________________________WD 5___________

Query     1201 TMLAMGFENGTLELFAVENRKVQLIYSIEEVHEHCIRQLLFSPCKLLLISCAEQLCFWNVTHMRNNQLEREQKRRRSRRH 1280
WD40-rpts      _______________)               (___________WD 6___________)                     

Query     1281 KQHSVTQEDAVDAAPIAADIDVDVTFVADEFHPVNRGTAELWRNKRGNAIRPELLACVKFVGNEARQFFTDAHFSHFYAI 1360
WD40-rpts                                                                                      

Query     1361 DDEGVYYHLQLLELSRLQPPPDPVTLDIANQYEDLKNLRILDSPLMQDSDSEGADVVGNLVLEKNGGVARATPILEEASS 1440
WD40-rpts                                                                                      

6 WD40-repeats found in QUERY=FBpp0086122 (Len=1440):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  9   597-635      4.61  305.22  0.00479        2.5%     45.79
  WD 2:  Seg 13   636-679      6.78  394.74  0.00030       20.0%     52.27
  WD 3:  Seg 21   746-792      5.22  330.47  0.00219       15.0%     33.76
  WD 4:  Seg 43  1044-1083     5.41  338.26  0.00172        2.5%     32.71
  WD 5:  Seg 50  1159-1216     5.64  347.74  0.00128       20.0%     41.15
  WD 6:  Seg 54  1232-1259     2.78  229.35  0.04935       20.0%     29.89

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  597-635    -HQ----HRQIINLGDNE-------GR------------------HAVYLHNDFCLIALASGQILLTDV
   WD 2  636-679    SLEGEDTYLLRDESDSSD-------IL------------------RMAVFNQQKHLITLHCNGSVKLWS
   WD 3  746-792    WDE----QDQEFKLSHVPVLKTMQSGI------------------RCFVQVLKRYYVVCTSNCTLTVWD
   WD 4 1044-1083   IHD----TALPQQFIEEP-------ID------------------YLKQVSPNILVASAHSAQKTVIFQ
   WD 5 1159-1216   ENN----IIDVFRLIFSC-------NQLRYEQICEEEIAQKAKISYLVATDDGTMLAMGFENGTLELFA
   WD 6 1232-1259   --------------HEHC-------IR------------------QLLFSPCKLLLISCAEQ--LCFWN

   WD40 Template    TGE----CLRTLSGHTSG-------VT------------------SVSFSPDGKRLVSGSEDGTIKVWD