Input parameters:

  Query = FBpp0086375 (Len=411)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0086375, Len=411):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKMVLSQRQREELNQAIADYLGSNGYADSLETFRKEADLSTEVEKKFGGLLEKKWTSVIRLQKKVMELEAKLTEAEKEVI 80  
WD40-rpts                                                           (__________________WD 1____

Query       81 EGAPTKNKRTPGEWIPRPPEKFSLTGHRASITRVIFHPIFALMVSASEDATIRIWDFETGEYERSLKGHTDSVQDVAFDA 160 
WD40-rpts      ______________)  (_________________WD 2________________)   (_________________WD 

Query      161 QGKLLASCSADLSIKLWDFQQSYECIKTMHGHDHNVSSVAFVPAGDYVLSASRDRTIKMWEVATGYCVKTYTGHREWVRM 240 
WD40-rpts      3________________)    (_________________WD 4________________)   (_______________

Query      241 VRVHIEGSIFATCSNDQTIRVWLTNSKDCKVELRDHEHTVECIAWAPEAAASAINEAAGADNKKGHHQGPFLASGSRDKT 320 
WD40-rpts      __WD 5________________)   (___________________________WD 6______________________

Query      321 IRIWDVSVGLCLLTLSGHDNWVRGLAFHPGGKYLVSASDDKTIRVWDLRNKRCMKTLYAHQHFCTSIDFHKAHPYVISGS 400 
WD40-rpts      ____)   (_________________WD 7________________)   (_________________WD 8________

Query      401 VDQTVKVWECR 411 
WD40-rpts      ________)  

8 WD40-repeats found in QUERY=FBpp0086375 (Len=411):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    54-95       3.98  278.90  0.01081       10.0%     28.33
  WD 2:  Seg  5    98-136     10.01  528.20  4.7e-06       40.0%     53.24
  WD 3:  Seg  9   140-178     10.55  550.37  2.4e-06       50.0%     56.52
  WD 4:  Seg 13   183-221     10.42  545.02  2.8e-06       45.0%     51.74
  WD 5:  Seg 17   225-263      9.82  520.45  6.0e-06       35.0%     54.40
  WD 6:  Seg 21   267-325      9.09  490.34  1.5e-05       35.0%     53.82
  WD 7:  Seg 25   329-367     11.15  575.38  1.1e-06       57.5%     56.97
  WD 8:  Seg 29   371-409     10.01  528.30  4.7e-06       37.5%     54.02

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   54-95     KWTSVIRLQKKVMEL-EAKLTEAEK--------------------EVIEGAPTKNKRTPGEWI
   WD 2   98-136    -PPEKFSLTGHRASITRVIFHPIFA--------------------LM---VSASEDATIRIWD
   WD 3  140-178    -GEYERSLKGHTDSVQDVAFDAQGK--------------------LL---ASCSADLSIKLWD
   WD 4  183-221    -YECIKTMHGHDHNVSSVAFVPAGD--------------------YV---LSASRDRTIKMWE
   WD 5  225-263    -GYCVKTYTGHREWVRMVRVHIEGS--------------------IF---ATCSNDQTIRVWL
   WD 6  267-325    -KDCKVELRDHEHTVECIAWAPEAAASAINEAAGADNKKGHHQGPFL---ASGSRDKTIRIWD
   WD 7  329-367    -GLCLLTLSGHDNWVRGLAFHPGGK--------------------YL---VSASDDKTIRVWD
   WD 8  371-409    -KRCMKTLYAHQHFCTSIDFHKAHP--------------------YV---ISGSVDQTVKVWE

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGK--------------------RL---VSGSEDGTIKVWD