WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: FBpp0087402 [Drosophila melanogaster] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = FBpp0087402 (Len=747) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (FBpp0087402, Len=747): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MKCKIPEISWHNRDPVLSVDIQQNGLGLRSPTICRLASGGSDAHVLIWYVNRSDDAEGVDVELAADLSRHQRAVNAVRWS 80
WD40-rpts (_________________WD 1_________________) (_________________WD
Query 81 PNGELLASGDDESVVFIWKQKADHEVVNIVDADGCSEQDKEVWLTLKVLRGHREDIYDLSWAPNSQFLVSGSVDNTAMLW 160
WD40-rpts 2________________) (_______________________WD 3______________________
Query 161 DVHSGKSLAILDDHKGYVQGVAWDPCNQYIATMSTDRQMRIFDANTKRVLHRVSKCVLPVKEDHEMHGKSMRLYQDGTLQ 240
WD40-rpts ) (_________________WD 4________________) (_____
Query 241 TFFRRLCFTPDGKLLLTPSGITDYDGVVKPINTSYGFSRHDLSKPAFVLPFPKEYAVAVRCSPVLYRLRPYNAEKNPPII 320
WD40-rpts ___________WD 5________________) (_________________W
Query 321 SLPYRMIYAVATKNAVFFYDTQQPVPFAIVSNIHYSRLTDLAWSSDGTVLIVSSTDGYCSLITFEPTELGDCYEDMETVL 400
WD40-rpts D 6________________)(___________________WD 7__________________) (___________
Query 401 SVVLKSSENATVLKKKRQKLRKVSLDEPRKPLQEKSKPNTIRRASEAGITEVGEPELDAENDSSTHSVSSNKTNSPKTKA 480
WD40-rpts ____WD 8_______________)(____________________WD 9___________________) (_______
Query 481 SEEEKPTPIAIRRSPRKNSTAPMPIAIRRAPRKPEDKGNSESSKPKDEMEVTHTKTTQVQKTVASPVKRKVSTEAVPPAE 560
WD40-rpts __________WD10________________)
Query 561 TSQPALAVIPVFEKEIISSDDKFESPEKKSRPATPIQVRRQPRTPGSSSQFNLTPKSQPAKQATPIAVRRTPRVLIEMPV 640
WD40-rpts
Query 641 NSPVVPMEEAMDAWPLDESITPLPATKKDSRKPLPETVKTETKPAVIEASEATCERTEDIRLVYEDTQEETPKNPTESGP 720
WD40-rpts
Query 721 STPNNKTPRRVSLRTISTPKSKKKLLE 747
WD40-rpts
 10 WD40-repeats found in QUERY=FBpp0087402 (Len=747): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 2 10-49 6.48 382.17 0.00044 25.0% 19.70 WD 2: Seg 5 61-99 8.60 469.87 2.9e-05 32.5% 47.66 WD 3: Seg 9 111-161 9.01 486.84 1.7e-05 37.5% 54.03 WD 4: Seg 13 165-203 8.83 479.21 2.2e-05 25.0% 54.30 WD 5: Seg 19 235-272 4.66 307.11 0.00452 25.0% 38.72 WD 6: Seg 24 302-340 6.07 365.51 0.00074 10.0% 32.53 WD 7: Seg 27 341-383 7.17 411.03 0.00018 27.5% 57.05 WD 8: Seg 31 389-424 5.10 325.49 0.00255 15.0% 38.78 WD 9: Seg 34 425-469 5.41 337.98 0.00173 7.5% 21.75 WD10: Seg 36 473-511 5.74 351.61 0.00114 7.5% 14.16Multiple sequence alignment of 10 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 10-49 WHN-----------RDPVLSVDIQQNGLGLRSPTICRLASGGS----DAHVLIWY WD 2 61-99 -VE-----------LAADLSRHQRAVNAVRWSPNGELLASGDD----ESVVFIWK WD 3 111-161 DADGCSEQDKEVWLTLKVLRGHREDIYDLSWAPNSQFLVSGSV----DNTAMLWD WD 4 165-203 -GK-----------SLAILDDHKGYVQGVAWDPCNQYIATMST----DRQMRIFD WD 5 235-272 -----------------QDGTLQTFFRRLCFTPDGKLLLTPSGITDYDGVVKPIN WD 6 302-340 -SP-----------VLYRLRPYNAEKNPPIISLPYRMIYAVAT----KNAVFFYD WD 7 341-383 TQQ--------PVPFAIVSNIHYSRLTDLAWSSDGTVLIVSST----DGYCSLIT WD 8 389-424 LGD-----------CY----EDMETVLSVVLKSSENATVLKKK----RQKLRKVS WD 9 425-469 LDE------PRKPLQEKSKPNTIRRASEAGITEVGEPELDAEN----DSSTHSVS WD10 473-511 -TN-----------SPKTKASEEEKPTPIAIRRSPRKNSTAPM----PIAIRRAP WD40 Template TGE-----------CLRTLSGHTSGVTSVSFSPDGKRLVSGSE----DGTIKVWD |
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