Input parameters:

  Query = FBpp0087461 (Len=787)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0087461, Len=787):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLAGISEKSYAAEARYTNFYAGGDIAWSPNGHHLYCLNGSAVNQVDVQTSQILNSYGLSSPSADNKRPAELDNIDVEEDT 80  
WD40-rpts             (_________________WD 1________________)                     (____________

Query       81 ITCFGLSQEHLVTAHRSGLLRLWQLDTGKLVKLWKAQHKGPVIRVEFSPCGRLICTSGGADATLRLWDYSNNSCLGALKD 160 
WD40-rpts      ____WD 2_______________)   (__________________WD 3_________________)   (________

Query      161 FPGPAWLLVFHPNVLRKEIYAGGSDNTVYAWNYETKTLVHKMRGHLSQVTGLSFKSNASDCNEIVTVSRDKVMIVWQLQE 240 
WD40-rpts      __________WD 4_________________)   (__________________WD 5__________________)(__

Query      241 QLESKQLKVLPLYDELEGVVYADEGQLIIVASGSGKLQQVDPKSWKIRDILSQSDFQISRLLHCSELKQLALVTTEQNIL 320 
WD40-rpts      _________________WD 6___________________)   (_________________WD 7______________

Query      321 VYDVETLEPIKHLVGYNDEILDMCFMGEHDRYLAVATNSKHFKLYDTEHDMNCKLIVGHSDTVMSLAASQNLLISVGKDC 400 
WD40-rpts      __)   (_________________WD 8_________________)   (________________WD 9__________

Query      401 SVRLWRLQHDKDCSLEALTQQANCHTSTIGCVAMTHNGATGFASVSQDGSMKVWQLVRSKEDRNSYSFNLRYAALSHDKE 480 
WD40-rpts      _____)             (_______________WD10_______________)            (____________

Query      481 VNCVAYAPNNKLIATASQDKTAKVWLAESNTLQGVLRGHTRGVWSVRFSPVDQIVLTSSSDCTLRIWSISNFSCIKRFDQ 560 
WD40-rpts      _____WD11________________)   (_________________WD12________________)   (________

Query      561 ECTILRAEFLDHGKFIISAASDGLLKLWNIKTNTCLQSLDEHNDRVWALAVSARSNRFFYTGGADSKLIRFGDVTQVTRN 640 
WD40-rpts      ________WD13________________)   (__________________WD14_________________)       

Query      641 EALDKRQAALEQEQTLHSLLHAQKQLHKAFVLALNLDKPKASFDIINHFVRKRDEPGLRQLVDQLNVDQRVALLQHVKAW 720 
WD40-rpts                                                                                      

Query      721 TTNSRHSQAGNMILKYLIGDALLDPKARFYYNGNMVEVLTPYVQRHFKRVTELNKDLAFLEFIVKCM 787 
WD40-rpts                                                                         

14 WD40-repeats found in QUERY=FBpp0087461 (Len=787):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     8-46       3.66  265.80  0.01619       12.5%     49.04
  WD 2:  Seg  5    68-104      4.77  311.66  0.00392       15.0%     42.29
  WD 3:  Seg  8   108-148      6.95  401.70  0.00024       35.0%     53.88
  WD 4:  Seg 12   152-192      7.48  423.57  0.00012       25.0%     58.30
  WD 5:  Seg 16   196-237      7.67  431.55  9.5e-05       32.5%     57.98
  WD 6:  Seg 20   238-281      6.56  385.71  0.00039       17.5%     51.47
  WD 7:  Seg 24   285-323      7.16  410.32  0.00018       17.5%     57.20
  WD 8:  Seg 28   327-366      6.44  380.84  0.00046       17.5%     57.04
  WD 9:  Seg 32   370-406      6.96  402.12  0.00024       22.5%     53.33
  WD10:  Seg 36   420-455      6.94  401.39  0.00024       30.0%     49.96
  WD11:  Seg 39   468-506      8.14  450.90  5.2e-05       27.5%     50.93
  WD12:  Seg 43   510-548      9.71  515.86  6.9e-06       37.5%     55.94
  WD13:  Seg 47   552-589      7.61  428.95  0.00010       22.5%     54.93
  WD14:  Seg 51   593-633      6.73  392.55  0.00032       25.0%     51.19

Multiple sequence alignment of 14 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    8-46     KSYAAEA----RYT-NFYAGGDIAW---SPN--GH-HL--Y-CLN-GSAVNQVD
   WD 2   68-104    -PAELDN----IDV-EEDTI--TCF---GLS--QE-HL--V-TAHRSGLLRLWQ
   WD 3  108-148    -GKLVKL----WKAQHKGPVIRVEF---SPC--GR-LI--CTSGGADATLRLWD
   WD 4  152-192    -NSCLGA----LKD-FPGPAWLLVF---HPNVLRK-EI--Y-AGGSDNTVYAWN
   WD 5  196-237    -KTLVHK----MRG-HLSQVTGLSFKSNASD--CN-EI--V-TVSRDKVMIVWQ
   WD 6  238-281    LQEQLESKQLKVLP-LYDELEGVVY---ADE--GQ-LI--I-VASGSGKLQQVD
   WD 7  285-323    -WKIRDI----LSQ-SDFQISRLLH---CSE--LK-QL--A-LVTTEQNILVYD
   WD 8  327-366    -LEPIKH----LVG-YNDEILDMCF---MGE-HDR-YL--A-VATNSKHFKLYD
   WD 9  370-406    -DMNCKL----IVG-HSDTVMSLAA---SQN-----LL--I-SVGKDCSVRLWR
   WD10  420-455    -----QQ----ANC-HTSTIGCVAM---THN--GATGF--A-SVSQDGSMKVWQ
   WD11  468-506    -FNLRYA----ALS-HDKEVNCVAY---APN--NK-LI--A-TASQDKTAKVWL
   WD12  510-548    -NTLQGV----LRG-HTRGVWSVRF---SPV--DQ-IV--L-TSSSDCTLRIWS
   WD13  552-589    -FSCIKR----FDQ-ECT-ILRAEF---LDH--GK-FI--I-SAASDGLLKLWN
   WD14  593-633    -NTCLQS----LDE-HNDRVWALAV---SAR--SN-RFFYT-GGADSKLIRFGD

   WD40 Template    TGECLRT----LSG-HTSGVTSVSF---SPD--GK-RL--V-SGSEDGTIKVWD