Input parameters:

  Query = FBpp0087476 (Len=411)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0087476, Len=411):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSDFNKYCEEAAREALPDSEDEEDIGDEDTCSAQDLAAEFQLKYKPQDEVSVSLQREYVLSLAADQGFSRMAAGLSNSAV 80  
WD40-rpts                                                   (_________________WD 1_____________

Query       81 HIYNLDSGAGKLENFSYLPPTDSPQSVSICGVRFLDEGPHNILVGTTDGYVRLYDLRLRGEQARFKYTQHPNVPPVPKSL 160 
WD40-rpts      ___)      (____________________WD 2___________________)             (___________

Query      161 SCFDRNANGRIICCGTEQFHSNAFLVFFDVRERQQMGVYFESHEDDITSLRFHAQNPDLLATGSVDGLVNVFDVKEPDED 240 
WD40-rpts      _______WD 3_________________)(___________________WD 4___________________)      (

Query      241 EALLNTFNTESSVARLAWHRNVYDKDIISCVTTTGDFKSYECEEGDEVASFERPDVTAAIRRKKAANFNLINAHNQEDGG 320 
WD40-rpts      __________________WD 5__________________)                                       

Query      321 VFLLAGTNFNKGEILRSVSVTSKNSLQPLANFQGNKQIVRDSLFDSKRSLLFTGGESGIVTVWAQDASGTAFSSEKLKAR 400 
WD40-rpts                (________________________WD 6________________________)                

Query      401 KEKKSRKQAPY 411 
WD40-rpts                 

6 WD40-repeats found in QUERY=FBpp0087476 (Len=411):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    46-84       8.11  449.50  5.4e-05       12.5%     57.52
  WD 2:  Seg  5    91-135      7.37  419.16  0.00014       25.0%     40.33
  WD 3:  Seg  9   149-189      5.85  356.28  0.00098       10.0%     39.05
  WD 4:  Seg 12   190-233      7.63  429.94  1.0e-04       30.0%     44.84
  WD 5:  Seg 15   240-281      6.27  373.75  0.00057       17.5%     50.97
  WD 6:  Seg 23   331-384      8.33  458.96  4.1e-05       30.0%     40.59

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   46-84     -PQ----D--------------EVSVSLQREYVLSLAADQ---GF-SRMAAGLS----NSAVHIYN
   WD 2   91-135    KLENFSYL--------------PPTDSPQSVSICGVRFLD---EGPHNILVGTT----DGYVRLYD
   WD 3  149-189    QHP---------------------NVPPVPKSLSCFDRNA---NG-RIICCGTEQFHSNAFLVFFD
   WD 4  190-233    VRE-RQQM--------------GVYFESHEDDITSLRFHA--QNP-DLLATGSV----DGLVNVFD
   WD 5  240-281    -DE----A--------------LLNTFNTESSVARLAWHRNVYDK-DIISCVTT----TGDFKSYE
   WD 6  331-384    KGE----ILRSVSVTSKNSLQPLANFQGNKQIVRDSLFDS---KR-SLLFTGGE----SGIVTVWA

   WD40 Template    TGE----C--------------LRTLSGHTSGVTSVSFSP---DG-KRLVSGSE----DGTIKVWD