Input parameters:

  Query = FBpp0087477 (Len=341)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0087477, Len=341):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAAGLSNSAVHIYNLDSGAGKLENFSYLPPTDSPQSVSICGVRFLDEGPHNILVGTTDGYVRLYDLRLRGEQARFKYTQH 80  
WD40-rpts                             (__________________WD 1__________________)             (_

Query       81 PNVPPVPKSLSCFDRNANGRIICCGTEQFHSNAFLVFFDVRERQQMGVYFESHEDDITSLRFHAQNPDLLATGSVDGLVN 160 
WD40-rpts      _________________WD 2_________________)(___________________WD 3_________________

Query      161 VFDVKEPDEDEALLNTFNTESSVARLAWHRNVYDKDIISCVTTTGDFKSYECEEGDEVASFERPDVTAAIRRKKAANFNL 240 
WD40-rpts      __)         (_________________WD 4________________)                             

Query      241 INAHNQEDGGVFLLAGTNFNKGEILRSVSVTSKNSLQPLANFQGNKQIVRDSLFDSKRSLLFTGGESGIVTVWAQDASGT 320 
WD40-rpts                          (________________________WD 5________________________)      

Query      321 AFSSEKLKARKEKKSRKQAPY 341 
WD40-rpts                           

5 WD40-repeats found in QUERY=FBpp0087477 (Len=341):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    24-65       7.60  428.74  0.00010       25.0%     40.62
  WD 2:  Seg  8    79-119      6.02  363.38  0.00079       10.0%     42.75
  WD 3:  Seg 11   120-163      7.43  421.78  0.00013       30.0%     44.22
  WD 4:  Seg 14   173-211      6.01  362.91  0.00080       15.0%     48.34
  WD 5:  Seg 21   261-314      8.48  464.87  3.4e-05       30.0%     43.37

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   24-65     NFS---Y--------------LPPTDSPQSVSICGVRFLD---EGPHNILVGTT----DGYVRLYD
   WD 2   79-119    QHP---------------------NVPPVPKSLSCFDRNA---NGR-IICCGTEQFHSNAFLVFFD
   WD 3  120-163    VRERQQM--------------G-VYFESHEDDITSLRFHA--QNPD-LLATGSV----DGLVNVFD
   WD 4  173-211    ---------------------L-LNTFNTESSVARLAWHRNVYDKD-IISCVTT----TGDFKSYE
   WD 5  261-314    KGE---ILRSVSVTSKNSLQPL-ANFQGNKQIVRDSLFDS---KRS-LLFTGGE----SGIVTVWA

   WD40 Template    TGE---C--------------L-RTLSGHTSGVTSVSFSP---DGK-RLVSGSE----DGTIKVWD