Input parameters:

  Query = FBpp0087937 (Len=354)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0087937, Len=354):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFDVEPIIADHKDVIHDVVFDYYGRRMATCSSDQTVKIWDEDGQGKWNVTSSWKAHSGSIWRVSWAHPEFGQVVATCSFD 80  
WD40-rpts      (_________________WD 1_________________)      (__________________WD 2___________

Query       81 RTASVWEEVIGEKVSSTNTPTRRWVRRTTLVDSRTSVTDVEFAPKYLGLLLATASADGIIRIYEAPDIMNLSQWPVQHEI 160 
WD40-rpts      ______)                (__________________WD 3_________________)                

Query      161 SNKLPLSCLSWNTSTYMVTQLLAAGSDEAATPTGKVFLFAYSENSRKCVKIDTVNDITDPVTDVAFAPNAGRTFHMLAVA 240 
WD40-rpts                                               (______________________WD 4____________

Query      241 SKDLYIVNLRGVTDATDISKLDIQTIKFSEHNCPVWRVCWNMLATMLISTGDDGCVRLWRMNYNRQWRCAAVLKAEGSGP 320 
WD40-rpts      _________)           (_________________WD 5________________)(___________________

Query      321 TYEPAPPTPTLATTASATAKFYKKGTIGNQVPWH 354 
WD40-rpts      WD 6__________________)           

6 WD40-repeats found in QUERY=FBpp0087937 (Len=354):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-40      10.57  551.12  2.3e-06       27.5%     51.00
  WD 2:  Seg  5    47-87       7.40  420.26  0.00013       22.5%     50.90
  WD 3:  Seg 10   104-144      7.71  433.13  9.0e-05       32.5%     57.46
  WD 4:  Seg 18   202-250      6.90  399.60  0.00026       30.0%     49.56
  WD 5:  Seg 22   262-300      8.00  444.95  6.3e-05       22.5%     55.58
  WD 6:  Seg 26   301-343      3.30  251.03  0.02548       10.0%     22.85

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-40     MFD-------V-----EPIIADHKDVIHDVVFD--YY--GRR----MATCSSDQTVKIWD
   WD 2   47-87     -WN-------V-----TSSWKAHSGSIWRVSWAHPEF--GQV----VATCSFDRTASVWE
   WD 3  104-144    -WV-------R-----RTTLVDSRTSVTDVEFA--PKYLGLL----LATASADGIIRIYE
   WD 4  202-250    SEN-------SRKCVKIDTVNDITDPVTDVAFA--PN--AGRTFHMLAVASKDLYIVNLR
   WD 5  262-300    -DI-------Q-----TIKFSEHNCPVWRVCWN--ML--ATM----LISTGDDGCVRLWR
   WD 6  301-343    MNYNRQWRCAA-----VLKAEGSGPTYEPAPPT--PT--LAT----TASAT----AKFYK

   WD40 Template    TGE-------C-----LRTLSGHTSGVTSVSFS--PD--GKR----LVSGSEDGTIKVWD