Input parameters:

  Query = FBpp0088472 (Len=544)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0088472, Len=544):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGLVLIKFLRSTYSTLSGGKKQPLNLSVYNVQATNIPPKETLVYTKQTQTTSTGGGNGDVLAFDAQGDDEESSLQNLGNG 80  
WD40-rpts                                                                                      

Query       81 FTSKLPPGYLTHGLPTVKDVAPAITPLEIKKETEVKKEVNELSEEQKQMIILSENFQRFVVRAGRVIERALSENVDIYTD 160 
WD40-rpts                                                                                      

Query      161 YIGGGDSEEANDERSHARLSLNRVFYDERWSKNRCITSMDWSTHFPKLVVGSYHNNEESPNEPDGVVMVWNTKFKKSTPE 240 
WD40-rpts                                                                             (________

Query      241 DVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVQKRTPIQRTPLSAAAHTHPVYCLQMVGTQNAHNVISISSDGK 320 
WD40-rpts      ___________WD 1___________________)           (_________________WD 2____________

Query      321 LCSWSLDMLSQPQDTLELQQRQSKAIAITSMAFPANEINSLVMGSEDGYVYSASRHGLRSGVNEVYERHLGPITGISTHY 400 
WD40-rpts      ____)                                                  (______________________WD

Query      401 NQLSPDFGHLFLTSSIKIWSLKLPISSCQFSVVSGINSNKPLYSFEDNSDYMMDVAWSPVHPALFAAVDGSGRLDLWNLN 480 
WD40-rpts       3______________________)             (_________________WD 4_________________)(_

Query      481 QDTEVPTASIVVAGAPALNRVSWTPSGLHVCIGDEAGKLYVYDVAENLAQPSRDEIKMNQSDEV 544 
WD40-rpts      ___________________WD 5___________________)                     

5 WD40-repeats found in QUERY=FBpp0088472 (Len=544):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  7   232-275      3.52  260.07  0.01931       27.5%     39.26
  WD 2:  Seg 12   287-325      4.46  298.80  0.00584       22.5%     44.45
  WD 3:  Seg 18   376-425      3.10  242.76  0.03282       17.5%     33.68
  WD 4:  Seg 22   439-478      3.82  272.33  0.01324       15.0%     55.34
  WD 5:  Seg 26   479-523      4.22  288.95  0.00792       22.5%     58.12

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  232-275    TK---F-----KKSTPEDVFHCQSAVMSTCF--AKFNPN-------LILGGTYSGQIVLWD
   WD 2  287-325    TP-----------LS---AAAHTHPVYCLQMVGTQ-NAH-------NVISISSDGKLCSWS
   WD 3  376-425    HGLRSG-----VNEV---YERHLGPITGIST--HY-NQLSPDFGHLFLTSSIKIWSLKLPI
   WD 4  439-478    -N---K-----PLYS---FEDNSDYMMDVAW--SPVHPA-------LFAAVDGSGRLDLWN
   WD 5  479-523    LN---QDTEVPTASI---VVAGAPALNRVSW--TP-SGL-------HVCIGDEAGKLYVYD

   WD40 Template    TG---E-----CLRT---LSGHTSGVTSVSF--SP-DGK-------RLVSGSEDGTIKVWD