Input parameters:

  Query = FBpp0110135 (Len=2003)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0110135, Len=2003):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDTTQESDLLGEEEELENENDVSFPRDIVSVEHSFGYDCKKLFNLVLVDSDTLVFASGNFLNYFSISRQEISFQETVYGC 80  
WD40-rpts                                                                       (______________

Query       81 GVGFITKNEHPDYTNLFTVGENGARPTVFIYEYPSLNVRVKLLNAAQNCFTAGSYNKTGELFASQAGYPDFIITIWRWEN 160 
WD40-rpts      _______WD 1____________________)(____________________WD 2___________________)   

Query      161 AEVVLRAKSFQSDILFVHFSEHNPILLCSSGLSHIKFWKMANTFTGLKLKGDLGRFGKTDFSDIYAMYMLQDENVISGSD 240 
WD40-rpts      (_________________WD 3________________)           (________________WD 4_________

Query      241 WGNMLLWQAGLIKFEICRKGRKPCHTKPITRITMKNGEVTTVGMDGYVRVWYWETVDLADPPEDDLFVEIDPIYEFKIAD 320 
WD40-rpts      _______)          (______________WD 5______________)                            

Query      321 VELRCMQKIHPFDESDFTHYAQDGNGGIWFCDINTYDVPQKPRKLYSCIGGKVLAAQMSPVSPHFLCMSESGKLFVYQYD 400 
WD40-rpts      (_________________WD 6_________________)_________________WD 7________________)(_

Query      401 EQRLILEKEFPAEGVDVIWLDTNISVKGTELVAAFKDGILRQMYLDLSNGERPKMTRVRAFKAHTSPITALTVSRNSSLL 480 
WD40-rpts      ___________________WD 8____________________)  (_____________________WD 9________

Query      481 LTGSADKSIFIYQLSRDEHQMVDMRPLGFVQFAAIPNCFYWHETEPTVVLVGCKSGDLYEYNIRTEVTDHETYLSYNITE 560 
WD40-rpts      ____________)                                                                   

Query      561 NSRMRHTKFASIKSRIRRDIHRENVKKRKERKRERKMNEVEKLKKANPGLQIDIESALADSEPDEEEEPLHIPTVPNAII 640 
WD40-rpts                                                                                      

Query      641 WLRYTLRDTIWVSMAGYDAGYIYELEFNAAEPTRATIIAEADDIEIHSYCIIDEFIIFGLHNGRIRINRINPDNFTDLSE 720 
WD40-rpts                                 (__________________WD10__________________)(__________

Query      721 FRIYPMHDGLKGTIPKIDISYSGEHLLTIGYDGNVFLHKWNGPKIVRNKVRDKLPPLPEGVTQIPDIEPEACSLEQEKIN 800 
WD40-rpts      ____________WD11______________________)                                         

Query      801 AELRRQQEAADAHDRDVLSKIGALQNVYFDIIRINEELPPGLRAKDTDLLLDDRITRQIRNELQAELDDVREDLAYDLEF 880 
WD40-rpts                                                                                      

Query      881 AQVGHTKLYNHFLKELVQVPFTVAPLRANVPGVSTFRLQALGEEHAQIKQDIEDRLKREHDMGLHDYVAPERSDESIGEP 960 
WD40-rpts                                                                                      

Query      961 PPESFFFGRDPKSIEPRFSKKMMRLLTRYRKRQIFEVRRIFDWDKLERQKPDPNRNHPDDDAQIEDAKRNLGDFKLKIGS 1040
WD40-rpts                                                                                      

Query     1041 DYEPKSSETLTQKYIEVVECREQYFAMVDAFNQMVLDLRERKGELDQFITAKRNRLAVIHNYLPEPDRQPLDPIQEIDMD 1120
WD40-rpts                                                                                      

Query     1121 LEYPELNLIEHYTPGCGVEIDDILTLEHSVDQVIARMAPMRSTANVSLFSLHGLDVPELHEHTAFTMLQISKLNRSLPNA 1200
WD40-rpts                                                                                      

Query     1201 ELDEELLKLPPKSDPAYFELNDDGQVPYMMETRHRWLRQLLVEQNAIRTEVDEEVRQFDKALEKLQVRRFHVKMDAEFMT 1280
WD40-rpts                                                                                      

Query     1281 AFMNSLNQELYILRDSEEIETQLLLNAKTAMSTRNDLQMVINSTNRQLDELRRNIDKLGEQIVALQVLFATTVKGHKFFD 1360
WD40-rpts                                                                                      

Query     1361 FLRRIFKKKWRPPKVSRGDDESSSSSSSSSSSSEDEQADNKSLDSLDMTTIRLDEATCPTGLDRSLYDLAFSMRSDRHDL 1440
WD40-rpts                                                                                      

Query     1441 ERNVRELTREVENKRKEIAEMQIKMKFHEEVYQREKNALLQFRRNRQQEVNKVHISAILRMDQLQHFYDGDDYRDLSKAI 1520
WD40-rpts                                                                                      

Query     1521 LFDADMLVDLRRRADQLSEETLATKRWHRINFIHLRRMNTDIKFMRFEITRLEEEIRQAMMKKFGIIVNLDELEEEVLRR 1600
WD40-rpts                                                                                      

Query     1601 YIFDLETNAEDELMALEKELLEKQKELARCEEELVLETQNNTEKVNIMTVLREENNILRTLLDIQNKNYAKWANPNALNL 1680
WD40-rpts                                                                                      

Query     1681 SYDIEKLRGIEKSLLDQIECLEREICALRLKSKPLQINYEFEVDPNAQPQVVTSEIMPNDDAMVCPAILNVDAYMLPPMP 1760
WD40-rpts                                                                                      

Query     1761 DEFIMDRVQTIVQKSFNRFFGKSTTPENVRKFAQRSSLYLCQAAYSFQGRYTDRIAECITEHLQTFVPKKYFIHISNEEL 1840
WD40-rpts                                                                                      

Query     1841 RKLFNEVVAVFDYERSDVNTEELISGIFDHAKDSLCAHVHMGDSEVVNRTHFIVAHMFKELIEVLPLEEFQADETLRMIV 1920
WD40-rpts                                                                                      

Query     1921 DVLEREPMVDPRAIAVEQLIDSTLQHARENLIDGITAVPIRSLGSSIQRDLIKRRQYKQPSCESPMSVRIATKKPGTSSG 2000
WD40-rpts                                                                                      

Query     2001 LPF 2003
WD40-rpts         

11 WD40-repeats found in QUERY=FBpp0110135 (Len=2003):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    66-112      3.99  279.61  0.01057       22.5%     54.06
  WD 2:  Seg  9   113-157      4.58  303.95  0.00498       22.5%     46.41
  WD 3:  Seg 13   161-199      5.86  356.87  0.00097       25.0%     53.79
  WD 4:  Seg 17   211-248      3.33  252.13  0.02463       22.5%     39.86
  WD 5:  Seg 21   259-292      4.39  295.90  0.00639       20.0%     40.97
  WD 6:  Seg 26   321-360      2.91  235.06  0.04149       10.0%     16.45
  WD 7:  Seg 29   360-398      5.99  362.01  0.00082       20.0%     46.30
  WD 8:  Seg 32   399-444      4.84  314.47  0.00359       22.5%     44.29
  WD 9:  Seg 36   447-493      7.11  408.19  0.00020       27.5%     46.55
  WD10:  Seg 48   668-709      3.99  279.60  0.01058       12.5%     47.20
  WD11:  Seg 52   710-759      3.22  247.62  0.02829       15.0%     32.59

Multiple sequence alignment of 11 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   66-112    ISRQEIS----------F---QETVY------GCGVGFITKNEHPDYTNLFT--VGENGARPTVFIYE
   WD 2  113-157    YP----S----------LNVRVKLLN------AAQNCFTAGSYNKTGELFASQAGYPDF---IITIWR
   WD 3  161-199    -A----E----------V---VLRAK------SFQSDILFVHFSEHNPILLC--SSGLS---HIKFWK
   WD 4  211-248    -G----D----------L---GRFGK------TDFSDIYAMYMLQDEN-VIS--GSDWG---NMLLWQ
   WD 5  259-292    KG----R-----------------KP------CHTKPITRITMKNGE--VTT--VGMDG---YVRVWY
   WD 6  321-360    VE----L----------R---CMQKI------HPFDESDFTHYAQDGNGGIW--FCDIN---TYDVPQ
   WD 7  360-398    -Q----K----------P---RKLYS------CIGGKVLAAQMSPVSPHFLC--MSESG---KLFVYQ
   WD 8  399-444    YD----E----------Q---RLILEKEFPAEGVDVIWLDTNISVKGTELVA--AFKDG---ILRQMY
   WD 9  447-493    LS----N---GERPKMTR---VRAFK------AHTSPITALTVSRNSSLLLT--GSADK---SIFIYQ
   WD10  668-709    NA--AEP----------T---RATII------AEADDIEIHSYCIIDEFIIF--GLHNG---RIRINR
   WD11  710-759    IN----PDNFTDLSEFRI---YPMHD------GLKGTIPKIDISYSGEHLLT--IGYDG---NVFLHK

   WD40 Template    TG----E----------C---LRTLS------GHTSGVTSVSFSPDGKRLVS--GSEDG---TIKVWD