WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: FBpp0110182 [Drosophila melanogaster] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = FBpp0110182 (Len=1504) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (FBpp0110182, Len=1504): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
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Query 1 MFAPRNSSPVAIYGKEDVAAYEIKLKKVLGLTVCSNAALDVSPVSGLLAYPAGCTVVLFNAKRQTQAYLVNTSRKAFTSV 80
WD40-rpts (________________
Query 81 AFSRCGRYVATGECGINPAIKVWELETPNGSLEHCSGGSVVAEFVDHKYAVTCVAFSPTGKYLVSVGSQHDMIVNVFDWR 160
WD40-rpts __WD 1_________________) (__________________WD 2_________________)(_
Query 161 ANLKMASNKISSKVAAVCFSEDGSYFVTVGNRHVKYWYLEGGRKYKDPIPLMGRSAILGDLRDNDFCAVACGKGICAEST 240
WD40-rpts ________________WD 3_________________)
Query 241 YAITRQGHLVEFSSRRLLDKWVQCRTTNANCICVNERFILVGCAESIIRIFNSATLEYVTTLPRTHYLGVDVAQGIQINH 320
WD40-rpts (_________________WD 4_________________) (___
Query 321 IMSVPQQAKFPDCIAMVFDEQRSKVSCVYNDHSLYIWDLRDISRVGKSHSFLYHSTCIWGVETVPYNVEREPSQTLPEEC 400
WD40-rpts _______________WD 5__________________)(_________________________WD 6____________
Query 401 FVTCSSDDTIRVWGLDGCTNNDIYRRNIYSKELLKIVYSDDELQFIKDQGSSLFDKAGNSSYDGRNGVRCIKISPELQHL 480
WD40-rpts _____________) (____________________WD 7_______
Query 481 ASGDRCGNIRVYSLVNLRLLTTIEAHESEVLCLEYSNEKIERKLLASASRDRLIHVFDVAQNYLLLQTLDDHSSSITSIK 560
WD40-rpts ____________) (__________________WD 8__________________)(____________________W
Query 561 FVGAGLNFQMISCGADKSIMFRSFQGNIFMRGTNTSGKTTLYDMEVDSNAKHILTACQDRNVRVYGTQNAKQTKTFKGSH 640
WD40-rpts D 9___________________)(___________________WD10__________________) (__________
Query 641 SDEGSLIKLSLDPSGIYVATSCTDKTLAVYDYYSNECMARMYGHSELVTGLKFTNDCRHLISASGDGCIFIWQVPHDMIV 720
WD40-rpts ________WD11__________________) (_________________WD12________________)
Query 721 TMQARMSQQRLRSGHAPLPRPLAPISPPDGIVLESPTSEIEQPQLQPKFGVAERFSDVGQLPQWAMRKAAADSDSGALSI 800
WD40-rpts (__________________WD13_________________)
Query 801 PTPSGGSATVPGMHAASSMGNLSSSPSQQMTGLAPRARGRWAQRSTQLETADDLRSNSESPLGTVSSVGGHSGVNVQTSD 880
WD40-rpts (_________________WD14_________________)
Query 881 YNSASSKDITYNQTYLSEDSSIDSGMETRRGELKFIGSSNNGTVVTVSSVSSIAVSASNGAMSTGSGAAQQRLQLPDKRL 960
WD40-rpts (_________________WD15_________________)
Query 961 KPGLRFDTHTHDHDGDVEDISDGERTSSDHGMFYNNLAPSTPTDFKVTAMNEDELRKSVRRQKFEKSGLQLTPSALSGNG 1040
WD40-rpts
Query 1041 SSHTASTGTGTSDTEDEGSTPSAENAERSLASTLGGSSENLPQSSTNSFLHAALPEGPGLTTPMERGGSSRRSISAKHNT 1120
WD40-rpts
Query 1121 ENGKSVAAPPTITKSYTSTKKEELLQVINKVKQQLENVGHRPLRGSHSISDLSLAANLDGSRNAGGGPGRYQKPGNPKTL 1200
WD40-rpts
Query 1201 NPMPIEESSIRRACSLSDLHMGNFGKPGKSQNGTPQKPQVQHRNGNVSRSASKRNSLQGKTGLGASSNSMNVLNQGSDSE 1280
WD40-rpts
Query 1281 PEDSNRLRSASNGQGRSNGPIAANRQYSNKINNVNNNRRKTPNFSSATPMQDDSSSEETPNSTVNNKPIVPPRPRNLAFD 1360
WD40-rpts
Query 1361 HKSKLMINNSGSPGGNAKQRSGVTSTEDFEGTDPEAQVHNVINKLYTTTQAAMQLHANLKNTLLLKELENALIMSRNMLS 1440
WD40-rpts
Query 1441 SITNRQADKTNNGGGGLGVGGSGGLNHDQLNADNGDYLMMVNNCADLLSNLRTKHKPDDCENNS 1504
WD40-rpts
 15 WD40-repeats found in QUERY=FBpp0110182 (Len=1504): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 7 64-104 6.11 367.03 0.00070 27.5% 55.64 WD 2: Seg 11 118-158 7.09 407.49 0.00020 40.0% 54.75 WD 3: Seg 15 159-198 5.29 333.12 0.00202 27.5% 51.35 WD 4: Seg 23 253-292 6.57 386.19 0.00039 7.5% 47.81 WD 5: Seg 28 317-358 5.96 360.99 0.00085 10.0% 46.96 WD 6: Seg 31 359-414 5.39 337.11 0.00178 27.5% 46.92 WD 7: Seg 38 449-493 7.30 416.10 0.00015 30.0% 50.44 WD 8: Seg 42 497-538 7.10 407.76 0.00020 35.0% 57.19 WD 9: Seg 46 539-583 6.77 394.31 0.00030 30.0% 52.92 WD10: Seg 50 584-626 6.10 366.64 0.00071 10.0% 58.28 WD11: Seg 54 630-671 6.72 392.32 0.00032 25.0% 57.12 WD12: Seg 58 675-713 9.23 495.84 1.3e-05 37.5% 58.43 WD13: Seg 63 726-766 4.75 311.02 0.00400 22.5% 21.97 WD14: Seg 71 840-879 3.19 246.40 0.02936 20.0% 14.54 WD15: Seg 74 918-957 5.67 348.75 0.00124 15.0% 20.00Multiple sequence alignment of 15 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 64-104 -QT---QA-----Y-----L--VNTSRK---AFTSVA--FSR-----------CG---R--YVATGECGINPAIKVWE WD 2 118-158 -GS---VV-----A-----E--FVDHKY---AVTCVA--FSP-----------TG---K--YLVSVGSQHDMIVNVFD WD 3 159-198 WRA---NL-----K----MA--SNKISS---KVAAVC--FSE-----------DG---S--YFVTVG---NRHVKYWY WD 4 253-292 SSR---RL-----L-----D--KWVQCR---TTNANC--ICV-----------NE---R--FILVGC--AESIIRIFN WD 5 317-358 QIN---HI-----M-----SVPQQAKFP---DCIAMV--FDE-----------QR---S--KVSCVY--NDHSLYIWD WD 6 359-414 LRD---IS-----RVGKSHS--FLYHST---CIWGVE--TVPYNVEREPSQTLPE---E--CFVTCS--SDDTIRVWG WD 7 449-493 QGS---SLFDKAGN-----S--SYDGRN---GVRCIK--ISP-----------EL---Q--HLASGD--RCGNIRVYS WD 8 497-538 -LR---LL-----T-----T--IEAHES---EVLCLE--YSN-----------EKIERK--LLASAS--RDRLIHVFD WD 9 539-583 VAQNYLLL-----Q-----T--LDDHSS---SITSIK--FVG-----------AG---LNFQMISCG--ADKSIMFRS WD10 584-626 FQGNIFMR-----G-----T--NTSGKT---TLYDME--VDS-----------NA---K--HILTAC--QDRNVRVYG WD11 630-671 -AK---QT-----K-----T--FKGSHSDEGSLIKLS--LDP-----------SG---I--YVATSC--TDKTLAVYD WD12 675-713 -NE---CM-----A-----R--MYGHSE---LVTGLK--FTN-----------DC---R--HLISAS--GDGCIFIWQ WD13 726-766 -MS---QQ-----R-----L--RSGHAP---LPRPLAPISPP-----------DG---I--VLESPT--SEIEQPQLQ WD14 840-879 RWA---QR-----S-----T--QLETAD---DLRSNS--ESP-----------LG---T--VSSVGG--HSGVNVQTS WD15 918-957 SSN---NG-----T-----V--VTVSSV---SSIAVS--ASN-----------GA---M--STGSGA--AQQRLQLPD WD40 Template TGE---CL-----R-----T--LSGHTS---GVTSVS--FSP-----------DG---K--RLVSGS--EDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |