Input parameters:

  Query = FBpp0110183 (Len=2347)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0110183, Len=2347):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFAPRNSSPVAIYGKEDVAAYEIKLKKVLGLTVCSNAALDVSPVSGLLAYPAGCTVVLFNAKRQTQAYLVNTSRKAFTSV 80  
WD40-rpts                                                                     (________________

Query       81 AFSRCGRYVATGECGINPAIKVWELETPNGSLEHCSGGSVVAEFVDHKYAVTCVAFSPTGKYLVSVGSQHDMIVNVFDWR 160 
WD40-rpts      __WD 1_________________)             (__________________WD 2_________________)(_

Query      161 ANLKMASNKISSKVAAVCFSEDGSYFVTVGNRHVKYWYLEGGRKYKDPIPLMGRSAILGDLRDNDFCAVACGKGICAEST 240 
WD40-rpts      ________________WD 3_________________)                                          

Query      241 YAITRQGHLVEFSSRRLLDKWVQCRTTNANCICVNERFILVGCAESIIRIFNSATLEYVTTLPRTHYLGVDVAQGIQINH 320 
WD40-rpts                  (_________________WD 4_________________)          (_________________

Query      321 IMSVPQQAKFPDCIAMVFDEQRSKVSCVYNDHSLYIWDLRDISRVGKSHSFLYHSTCIWGVETVPYNVEREPSQTLPEEC 400 
WD40-rpts      ________WD 5_________________________)(_________________________WD 6____________

Query      401 FVTCSSDDTIRVWGLDGCTNNDIYRRNIYSKELLKIVYSDDELQFIKDQGSSLFDKAGNSSYDGRNGVRCIKISPELQHL 480 
WD40-rpts      _____________)                                        (_________________WD 7____

Query      481 ASGDRCGNIRVYSLVNLRLLTTIEAHESEVLCLEYSNEKIERKLLASASRDRLIHVFDVAQNYLLLQTLDDHSSSITSIK 560 
WD40-rpts      ____________)   (__________________WD 8__________________)     (________________

Query      561 FVGAGLNFQMISCGADKSIMFRSFQGNIFMRGTNTSGKTTLYDMEVDSNAKHILTACQDRNVRVYGTQNAKQTKTFKGSH 640 
WD40-rpts      _WD 9_________________)(___________________WD10__________________)   (__________

Query      641 SDEGSLIKLSLDPSGIYVATSCTDKTLAVYDYYSNECMARMYGHSELVTGLKFTNDCRHLISASGDGCIFIWQVPHDMIV 720 
WD40-rpts      ________WD11__________________)   (_________________WD12________________)       

Query      721 TMQARMSQQRLRSGHAPLPRPLAPISPPDGIVLESPTSEIEQPQLQPKFGVAERFSDVGQLPQWAMRKAAADSDSGALSI 800 
WD40-rpts                                               (_________________WD13________________)

Query      801 PTPSGGSATVPGMHAASSMGNLSSSPSQQMTGLAPRARGRWAQRSTQLETADDLRSNSESPLGTVSSVGGHSGVNVQTSD 880 
WD40-rpts                                                                                      

Query      881 YNSASSKDITYNQTYLSEDSSIDSGMETRRGELKFIGSSNNGTVVTVSSVSSIAVSASNGAMSTGSGAAQQRLQLPDKRL 960 
WD40-rpts                                          (_________________WD14________________)     

Query      961 KPGLRFDTHTHDHDGDVEDISDGERTSSDHGMFYNNLAPSTPTDFKVTAMNEDELRKSVRRQKFEKSGLQLTPSALSGNG 1040
WD40-rpts                                                                                      

Query     1041 SSHTASTGTGTSDTEDEGSTPSAENAERSLASTLGGSSENLPQSSTNSFLHAALPEGPGLTTPMERGGSSRRSISAKHNT 1120
WD40-rpts                                                                                      

Query     1121 ENGKSVAAPPTITKSYTSTKKEELLQVINKVKQQLENVGHRPLRGSHSISDLSLAANLDGSRNAGGGPGRYQKPVDSHDT 1200
WD40-rpts                                                                                      

Query     1201 SQYTSPQNTTATAAPTNTQQQIQPPVQQQYQIPKEPHQQAQQQHQQYAPPASQQFFNCAAPKSKLQQNFQTMRQVQQHYP 1280
WD40-rpts                                                                                      

Query     1281 PYPHHVGVHQIHPPPGVPFGGSAAGSTSAMRSHSQPQNRQQQQQQQQQRAKRNPAGNNRRTPSILKHYKSCPVSPVHEEV 1360
WD40-rpts                                                                                      

Query     1361 EWSAEGNERGALLGEPKRHSVYADDARTILDMIHADTEKMIDEITRKYGDLDEPGIPASYSMPANLRNLGGLGSTGDSTP 1440
WD40-rpts                                                                                      

Query     1441 TGRTTQYYVYREFYQCERKVSLSDILQPEQFAASQRRLDEARFLETQRHSSASFFLTGQQSQESLSLLSDGDGPGSYCNS 1520
WD40-rpts                                                                                      

Query     1521 LESVLSDESDCQSAPLEYPQTQVAVLQQRHAGIRNFIIHGPVSKSYGNSPNAYGSFDYYMRQQHSTTTDSFDVTGYNLEP 1600
WD40-rpts                                                                                      

Query     1601 LKPLPSSKTYPRIAQVQASENIPTLRSKNKQYTSGVNKSLSTDFAQQRQQRNSNPMQSGDNLFVRKPLKPKPPVPAKPHN 1680
WD40-rpts                                                                                      

Query     1681 LVSTLSHMEKQQKQKSQSRTASVVQQFEHNLQKFEKEKQREREQQRRPAMRSSVSSGALAGGSTTQSCLKKVSRFDTSES 1760
WD40-rpts                                                                                      

Query     1761 SRRATSVRQKNRPKISVRFNTVSQIKYTPSAKRERQAREEEPPEMEVGSLPSDYGERSFEMYFAENGNAPENLENMQTLK 1840
WD40-rpts                                                                                      

Query     1841 LYTKPQLQAVVDEIQQEREKYRKNLDNAGKISGKGGSGKGKGAGSSTSHQCQNIAKKIDIIEKLIAMEENKMEQIRLATE 1920
WD40-rpts                                                                                      

Query     1921 SRLRPFNCNAKEKGYVKSLTMNFDMLARGEDPTEDEDLASKDASDLCAYARNIRRNCSLPDVLESTDFTGIYNSQGVELA 2000
WD40-rpts                                                                                      

Query     2001 KEVIADDESGDPVNPGITADSADHDGIGQTVVLRMEPGNPKTLNPMPIEESSIRRACSLSDLHMGNFGKPGKSQNGTPQK 2080
WD40-rpts                                                                                      

Query     2081 PQVQHRNGNVSRSASKRNSLQGKTGLGASSNSMNVLNQGSDSEPEDSNRLRSASNGQGRSNGPIAANRQYSNKINNVNNN 2160
WD40-rpts                                                                                      

Query     2161 RRKTPNFSSATPMQDDSSSEETPNSTVNNKPIVPPRPRNLAFDHKSKLMINNSGSPGGNAKQRSGVTSTEDFEGTDPEAQ 2240
WD40-rpts                                                                                      

Query     2241 VHNVINKLYTTTQAAMQLHANLKNTLLLKELENALIMSRNMLSSITNRQADKTNNGGGGLGVGGSGGLNHDQLNADNGDY 2320
WD40-rpts                                                                                      

Query     2321 LMMVNNCADLLSNLRTKHKPDDCENNS 2347
WD40-rpts                                 

14 WD40-repeats found in QUERY=FBpp0110183 (Len=2347):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  7    64-104      5.95  360.31  0.00087       27.5%     50.69
  WD 2:  Seg 11   118-158      6.97  402.64  0.00023       40.0%     51.15
  WD 3:  Seg 15   159-198      4.94  318.72  0.00315       27.5%     52.14
  WD 4:  Seg 23   253-292      5.92  359.39  0.00089        7.5%     48.34
  WD 5:  Seg 28   303-358      4.48  299.59  0.00570       10.0%     46.59
  WD 6:  Seg 31   359-414      4.99  320.71  0.00296       27.5%     47.24
  WD 7:  Seg 38   455-493      6.36  377.47  0.00051       25.0%     42.32
  WD 8:  Seg 41   497-538      6.78  394.70  0.00030       35.0%     56.96
  WD 9:  Seg 45   544-583      5.83  355.43  0.00101       30.0%     48.68
  WD10:  Seg 48   584-626      5.62  346.65  0.00133       10.0%     55.70
  WD11:  Seg 52   630-671      6.05  364.62  0.00076       22.5%     57.42
  WD12:  Seg 56   675-713      9.19  494.43  1.3e-05       37.5%     57.96
  WD13:  Seg 62   762-800      4.27  291.25  0.00738       10.0%     35.05
  WD14:  Seg 74   917-955      5.26  331.77  0.00210       17.5%     40.27

Multiple sequence alignment of 14 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   64-104    -QT----------------QA---Y-----LVNTS---RKAFTSVAFSR-----------CG---R--YVATGECG--INPAIKVWE
   WD 2  118-158    -GS----------------VV---A-----EFVDH---KYAVTCVAFSP-----------TG---K--YLVSV--GSQHDMIVNVFD
   WD 3  159-198    WRA----------------NL---K----MASNKI---SSKVAAVCFSE-----------DG---S--YFVTV--G---NRHVKYWY
   WD 4  253-292    SSR----------------RL---L-----DKWVQ---CRTTNANCICV-----------NE---R--FILVG--C--AESIIRIFN
   WD 5  303-358    PRTHYLGVDVAQGIQINHIMS---V-----PQQAK---FPDCIAMVFDE-----------QR---S--KVSCV--Y--NDHSLYIWD
   WD 6  359-414    LRD----------------IS---RVGKSHSFLYH---STCIWGVETVPYNVEREPSQTLPE---E--CFVTC--S--SDDTIRVWG
   WD 7  455-493    -DK----------------AG---N-----SSYDG---RNGVRCIKISP-----------EL---Q--HLASG--D--RCGNIRVYS
   WD 8  497-538    -LR----------------LL---T-----TIEAH---ESEVLCLEYSN-----------EKIERK--LLASA--S--RDRLIHVFD
   WD 9  544-583    --L----------------LL---Q-----TLDDH---SSSITSIKFVG-----------AG---LNFQMISC--G--ADKSIMFRS
   WD10  584-626    FQG----------------NIFMRG-----TNTSG---KTTLYDMEVDS-----------NA---K--HILTA--C--QDRNVRVYG
   WD11  630-671    -AK----------------QT---K-----TFKGSHSDEGSLIKLSLDP-----------SG---I--YVATS--C--TDKTLAVYD
   WD12  675-713    -NE----------------CM---A-----RMYGH---SELVTGLKFTN-----------DC---R--HLISA--S--GDGCIFIWQ
   WD13  762-800    -QP----------------QL---Q-----PKFGV---AERFSDVGQLP-----------QW---A--MRKAA--A--DSDSGALSI
   WD14  917-955    -GS----------------SN---N-----GTVVT---VSSVSSIAVSA-----------SN---G--AMSTG--S--GAAQQRLQL

   WD40 Template    TGE----------------CL---R-----TLSGH---TSGVTSVSFSP-----------DG---K--RLVSG--S--EDGTIKVWD