Input parameters:

  Query = FBpp0110188 (Len=1078)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0110188, Len=1078):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSKLETDSDSSEEFFDAEDTTPNRHSTLCRKLPPEVAQEFIFPEPAVRVNAAASSDSDATPIGAGTPATRSPTNSLGARL 80  
WD40-rpts                                                                                      

Query       81 KPQDAGVFVEPKPVIGPNSSTDGIFTNRSTHPFKVIETDAMSIQSMTSLGRVGRILAGSIDPSAISIDRESLASLNAQQQ 160 
WD40-rpts                                   (___________________________WD 1___________________

Query      161 KQQAQQQQQAQPTSSTSSNTPPSVGNTSSGMSTPRVSPKHQQSGKEVAATTTGIPSAASSAQSSGVGSMVLQEPDVIAST 240 
WD40-rpts      ________)                                                                       

Query      241 KLAQSKTTDSITSSGPVAPPRRKKKSRNCSISSSDQYSLPPADNEDTDSDTRSVKSVQGLQQKLRDDFVMEFESSLNNAT 320 
WD40-rpts                                                                                      

Query      321 SSASNITLTCSSTNTVVSASASTSAASSSLPSTIAIHMRPMVASVTIAGPKLTQSLGSSSTSVHSKPSPSNSAKSNSAPA 400 
WD40-rpts                                                                                      

Query      401 RVSSIDPNQGLNLFKAIQGGYVVKPRDEASNKAQGPSQDEIERIEKMLMESANRPKLAGTGSNSLGSSTRYPGFYRGVND 480 
WD40-rpts                                                                                      

Query      481 KERRKSAGDEDVLKQMNIYVRTRTSSGKQLTDFEILEQVPVKNLDTGENMPLSEMRSPPVPEGWNPLSLHILKLTSHLEV 560 
WD40-rpts                                                                                      

Query      561 IQKESDEESVIGIPPSIEGQQPDEEELETEDGSRLKKKTARIKRFFGSTMRKTVDKAKSIASEVSHARHKEDVADIVDAM 640 
WD40-rpts                                                           (_____________________WD 2_

Query      641 NPEQNIKIKASSSNKGPYEFTKLQHVQDLSGEDTSAVWCMKFSSCGRLLATAGQDKVLRIWVLKDAYPFFQDMRNKYNAD 720 
WD40-rpts      ___________________)  (_________________WD 3_________________)(_________________

Query      721 QKSSPTPSQESLVSQHSAEEAIAMATAAEKCTGPFMPKPFCTYNGHTSDLLDVSWSKNYFILSSSMDKTVRLWHISRKEC 800 
WD40-rpts      __WD 4___________________)          (________________WD 5________________)(_____

Query      801 LCCFQHIDFVTAIAFHPRDDRYFLSGSLDGKLRLWNIPDKKVALWNEVDGQTKLITAANFCQNGQFAVVGSYDGRCIFYN 880 
WD40-rpts      _____________WD 6__________________)(___________________WD 7___________________)

Query      881 TDQLKYHTQIHVRSTRGKNRIGRKISGIEPMPGEDKILVTSNDSRVRLYDLRDLNLSCKYKGYLNVSSQIKGSFSHDGKY 960 
WD40-rpts                    (_______________WD 8_______________)   (__________________WD 9____

Query      961 IIAGSENQCIYIWKTNHDYSKLSSVRRDRSDFWEGIKAHNATVTCAIFAPHPEAIIKPEPDEISNEKLAHNQPDPLVEQH 1040
WD40-rpts      _____________)               (_________________WD10________________)(___________

Query     1041 KKGCGYVLVSADFNGAIKVFINKTKPKHSSLPYTAIAD 1078
WD40-rpts      ___WD11_____________)                 

11 WD40-repeats found in QUERY=FBpp0110188 (Len=1078):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   110-169      3.18  246.06  0.02968       15.0%     13.90
  WD 2:  Seg 12   614-660      3.64  264.99  0.01659       10.0%     40.41
  WD 3:  Seg 15   663-702      8.03  446.25  6.0e-05       30.0%     57.09
  WD 4:  Seg 19   703-746      5.57  344.87  0.00140       17.5%     35.38
  WD 5:  Seg 22   757-794      7.31  416.47  0.00015       32.5%     49.38
  WD 6:  Seg 26   795-836      7.09  407.70  0.00020       30.0%     54.96
  WD 7:  Seg 30   837-880      7.95  442.94  6.7e-05       25.0%     54.06
  WD 8:  Seg 35   895-930      6.36  377.34  0.00051       12.5%     45.40
  WD 9:  Seg 38   934-974      7.63  429.87  0.00010       30.0%     54.30
  WD10:  Seg 42   990-1028     6.78  394.56  0.00030       15.0%     43.79
  WD11:  Seg 46  1029-1061     4.72  309.57  0.00418       20.0%     41.18

Multiple sequence alignment of 11 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  110-169    -TH----PFK-----VIETD-AMSIQSM--TSLG-RVGRILA-GSIDPSAISIDRESLASLNAQQQKQQAQQQQQ
   WD 2  614-660    VDK----AKSIASEVSHARH-KEDVADIVDAMNP-EQNIKIK-ASSSNKGPYEF---------------------
   WD 3  663-702    -LQ----HVQ-----DLSGEDTSAVWCM--KFSS-CGRLLAT-AGQDKVLRIWV---------------------
   WD 4  703-746    LKD-AYPFFQ-----DMRNK-YNADQKS--SPTP-SQESLVSQHSAEEAIAMAT---------------------
   WD 5  757-794    -PK----PFC-----TYNGH-TSDLLDV--SWSK-NY-FILS-SSMDKTVRLWH---------------------
   WD 6  795-836    ISR---KECL-----CCFQH-IDFVTAI--AFHPRDDRYFLS-GSLDGKLRLWN---------------------
   WD 7  837-880    IPDKKVALWN-----EVDGQ-TKLITAA--NFCQ-NGQFAVV-GSYDGRCIFYN---------------------
   WD 8  895-930    --------TR-----GKNRI-GRKISGI--EPMP-GEDKILV-TSNDSRVRLYD---------------------
   WD 9  934-974    -LN----LSC-----KYKGY-LNVSSQIKGSFSH-DGKYIIA-GSENQCIYIWK---------------------
   WD10  990-1028   -SD----FWE-----GIKAH-NATVTCA--IFAP-HPEAIIK-PEPDEISNEKL---------------------
   WD11 1029-1061   ----------------AHNQ-PDPLVEQ--HKKG-CGYVLVS-ADFNGAIKVFI---------------------

   WD40 Template    TGE----CLR-----TLSGH-TSGVTSV--SFSP-DGKRLVS-GSEDGTIKVWD---------------------