Input parameters:

  Query = FBpp0111869 (Len=1255)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0111869, Len=1255):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAWRFKASKYKNAAPIVPKAEACVREICVGSYQTYGNNIAASGAFMAFNWEHTGSSVAVLPLDDCGRKSKTMPLLHGHTD 80  
WD40-rpts                                                                          (___________

Query       81 TVTDLKFSPFHDGLLATASQDCLVKIWHIPEKGLEQSLSDPEAIFSHKQRRVETVGFHPTADGLMYSTAAGCVALFDLST 160 
WD40-rpts      ______WD 1_________________)          (_________________WD 2________________)   

Query      161 QKEIFSNNEHPEVIQSASWREDGSVLATSCKDKNVRIFDPRAAGSPIQLTAESHQSIKDSRVVWLGNQHRILTTGFDAAR 240 
WD40-rpts      (_________________WD 3________________)                                         

Query      241 LRQVIIRDVRNFNTPEKTLELDCSTGILMPLFDPDTNMLFLAGKGDTTINYLEITDKDPYLIEGLRHTGEQTKGACLVPK 320 
WD40-rpts              (____________________WD 4___________________) (__________________WD 5___

Query      321 RALKVMEAEVNRVLQLTSNMVIPIMYQVPRKTYRDFHADLYPETTGYKTELVAGEWLNGSNQAVPKMSLDPAKREHGDEP 400 
WD40-rpts      ______________)                                                                 

Query      401 IIIHRGNLSDFVKNLENQRAKSNTTGKPNQQAKRNDNEHFVMLNTGNNFEEKNGNDNSNESNGKKSTPSQSQPDGECSEL 480 
WD40-rpts                                                                                      

Query      481 IRKFEAKYKVDSEKEKAHAYAQSHEDDKESPTEHEHSTGSSEEVSSSGGLDNHSASGSHSPPKPMPRTSRSNSLPEASDS 560 
WD40-rpts                                                                                      

Query      561 AGESSSTNTPRPRPRTTAASAYKPRLGPKPFSSTTGDVSFDKVFAVPLAPGSHENISNVGQDSGVEMTPAQGAKPDLIVE 640 
WD40-rpts                                                         (_________________WD 6_______

Query      641 IEIKKKHEREPAVSGNGVQKSLTTSERRKIFEQNSESSENSTEGEDRTDADLRRNCTSRSSFAERRRIYENRSKSQVDEK 720 
WD40-rpts      _________)                                                                      

Query      721 PQSPVPLRREHSKVEPLKPNQQQQQQGNVIDTKRISVPEGKLMEEHRRGNGAGLKKSATEAAFSAASTKRTSTVFGKVSK 800 
WD40-rpts      (________________WD 7_______________)       (_________________WD 8______________

Query      801 FRHLKGTPGHKSTHIENLRNLSRQIPGECNGFHANQERVAVPLSGPGGKIAIFELSRPGRLPDGVIPSLVNGSNIMDFQW 880 
WD40-rpts      __)           (______________________WD 9_____________________)________________W

Query      881 DPFDAQRLAVACDDGIVKIWHIEAGGLSEPTNTPAGELTAHLDKIYFIRFHPLAADVLLTASYDMTIKLWDLRTMTEKCS 960 
WD40-rpts      D10_________________)          (_________________WD11_________________)   (_____

Query      961 LSGHTDQIFDFAWSPCGRLGATVCKDGKIRVYNPRKSETPIREGNGPVGTRGARITWALEGHYIVCTGFDKVSERQISVY 1040
WD40-rpts      ____________WD12________________)(___________________WD13___________________)   

Query     1041 NAQKLSAPLNTASLDVSPSILIPFYDEDSSTLFVTGKGDSTIYCYEITDEEPYICPLSHHRCTSLHQGLSFLTKNHCDVA 1120
WD40-rpts      (____________________WD14____________________)  (___________________WD15________

Query     1121 SVEFSKAYRLTNTTIEPLSFTVPRIKSELFQDDLFPPTRITWSATLSSEDWFASNDKAAPKVSLKPEGMETLSSIQQVPA 1200
WD40-rpts      ___________)                                                                    

Query     1201 QPVKKPDHPQFGGQKSEYEINKQQEIQKSVSARMEFTTKLEQDDMEGVDENEWQE 1255
WD40-rpts                                                             

15 WD40-repeats found in QUERY=FBpp0111869 (Len=1255):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    69-108      6.97  402.49  0.00023       35.0%     46.16
  WD 2:  Seg  8   119-157      6.96  402.17  0.00024       20.0%     43.60
  WD 3:  Seg 10   161-199      7.84  438.41  7.7e-05       20.0%     50.29
  WD 4:  Seg 18   249-293      4.71  309.38  0.00421       22.5%     40.52
  WD 5:  Seg 22   295-335      2.99  238.30  0.03760       15.0%     41.24
  WD 6:  Seg 29   612-650      3.68  266.75  0.01572       15.0%      4.21
  WD 7:  Seg 30   721-757      4.96  319.42  0.00308       15.0%     20.92
  WD 8:  Seg 33   765-803      7.03  405.16  0.00022       15.0%     37.39
  WD 9:  Seg 36   815-863      3.49  258.69  0.02014       17.5%     32.07
  WD10:  Seg 39   862-901      6.93  401.05  0.00024       22.5%     44.90
  WD11:  Seg 42   912-951      6.90  399.62  0.00026       30.0%     50.32
  WD12:  Seg 46   955-993      8.71  474.37  2.5e-05       30.0%     53.14
  WD13:  Seg 50   994-1037     3.28  250.25  0.02610       12.5%     50.52
  WD14:  Seg 54  1041-1086     5.30  333.59  0.00199       20.0%     45.33
  WD15:  Seg 58  1089-1132     3.37  254.01  0.02325       22.5%     48.65

Multiple sequence alignment of 15 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   69-108    -SK---TM---P-----LLH----GH--TDT-V------TDLKFSPFHDGLL-ATASQDCLVKIWH
   WD 2  119-157    -SD---PE---A-----IFS----HK--QRR-V------ETVGFHP-TADGL-MYSTAAGCVALFD
   WD 3  161-199    -QK---EI---F-----SNN----EH--PEV-I------QSASWRE-DGSVL-ATSCKDKNVRIFD
   WD 4  249-293    VRN---FN---T-----PEKTLELDC--STG-I------LMPLFDP-DTNMLFLAGKGDTTINYLE
   WD 5  295-335    TDKDPYLI---E-----GLR----HT--GEQ-T------KGACLVP-KRALK-V--MEAEVNRVLQ
   WD 6  612-650    -SH---EN---I-----SNV----GQ--DSG-V------EMTPAQG-AKPDL-IVEIEIKKKHERE
   WD 7  721-757    -PQ---SP---V-----PLR----RE--HSK-V--------EPLKP-NQQQQ-QQGNVIDTKRISV
   WD 8  765-803    -EH---RR---G-----NGA----GL--KKS-A------TEAAFSA-ASTKR-TSTVFGKVSKFRH
   WD 9  815-863    IEN---LRNLSR-----QIP----GE--CNG-FHANQERVAVPLSG-PGGKI-AIFELSRPGRLPD
   WD10  862-901    -PD---GV---I-----PSL----VN--GSN-I------MDFQWDPFDAQRL-AVACDDGIVKIWH
   WD11  912-951    -NT---PA---G-----ELT----AH--LDK-I------YFIRFHPLAADVL-LTASYDMTIKLWD
   WD12  955-993    -MT---EK---C-----SLS----GH--TDQ-I------FDFAWSP-CGRLG-ATVCKDGKIRVYN
   WD13  994-1037   PRKSETPI---R-----EGN----GP--VGTRG------ARITWAL-EGHYI-VCTGFDKVSERQI
   WD14 1041-1086   NAQ---KL---SAPLNTASL----DV--SPS-I------LIPFYDE-DSSTLFVTGKGDSTIYCYE
   WD15 1089-1132   DEE--PYI---C-----PLS----HHRCTSL-H------QGLSFLTKNHCDV-ASVEFSKAYRLTN

   WD40 Template    TGE---CL---R-----TLS----GH--TSG-V------TSVSFSP-DGKRL-VSGSEDGTIKVWD