Input parameters:

  Query = FBpp0111924 (Len=1539)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0111924, Len=1539):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTPASLSASTPTLSTLHHQRMALQSQSQSPLASPLTPSPSSVFGSPKFPANYERSEKIKLKKVLGLTVCSNAALDVSPVS 80  
WD40-rpts                                                           (__________________WD 1____

Query       81 GLLAYPAGCTVVLFNAKRQTQAYLVNTSRKAFTSVAFSRCGRYVATGECGINPAIKVWELETPNGSLEHCSGGSVVAEFV 160 
WD40-rpts      ______________)   (__________________WD 2_________________)             (_______

Query      161 DHKYAVTCVAFSPTGKYLVSVGSQHDMIVNVFDWRANLKMASNKISSKVAAVCFSEDGSYFVTVGNRHVKYWYLEGGRKY 240 
WD40-rpts      ___________WD 3_________________)  (________________WD 4________________)      (

Query      241 KDPIPLMGRSAILGDLRDNDFCAVACGKGICAESTYAITRQGHLVEFSSRRLLDKWVQCRTTNANCICVNERFILVGCAE 320 
WD40-rpts      ________________WD 5________________)          (_________________WD 6___________

Query      321 SIIRIFNSATLEYVTTLPRTHYLGVDVAQGIQINHIMSVPQQAKFPDCIAMVFDEQRSKVSCVYNDHSLYIWDLRDISRV 400 
WD40-rpts      ______)         (__________________________WD 7_________________________)(______

Query      401 GKSHSFLYHSTCIWGVETVPYNVEREPSQTLPEECFVTCSSDDTIRVWGLDGCTNNDIYRRNIYSKELLKIVYSDDELQF 480 
WD40-rpts      ___________________WD 8_________________________)                               

Query      481 IKDQGSSLFDKAGNSSYDGRNGVRCIKISPELQHLASGDRCGNIRVYSLVNLRLLTTIEAHESEVLCLEYSNEKIERKLL 560 
WD40-rpts         (____________________WD 9___________________)   (__________________WD10______

Query      561 ASASRDRLIHVFDVAQNYLLLQTLDDHSSSITSIKFVGAGLNFQMISCGADKSIMFRSFQGNIFMRGTNTSGKTTLYDME 640 
WD40-rpts      ____________)     (_________________WD11_________________)(___________________WD

Query      641 VDSNAKHILTACQDRNVRVYGTQNAKQTKTFKGSHSDEGSLIKLSLDPSGIYVATSCTDKTLAVYDYYSNECMARMYGHS 720 
WD40-rpts      12__________________)   (__________________WD13__________________)   (__________

Query      721 ELVTGLKFTNDCRHLISASGDGCIFIWQVPHDMIVTMQARMSQQRLRSGHAPLPRPLAPISPPDGIVLESPTSEIEQPQL 800 
WD40-rpts      _______WD14________________)(________________________WD15_______________________

Query      801 QPKFGVAERFSDVGQLPQWAMRKAAADSDSGALSIPTPSGGSATVPGMHAASSMGNLSSSPSQQMTGLAPRARGRWAQRS 880 
WD40-rpts      )                                      (_________________WD16________________)(_

Query      881 TQLETADDLRSNSESPLGTVSSVGGHSGVNVQTSDYNSASSKDITYNQTYLSEDSSIDSGMETRRGELKFIGSSNNGTVV 960 
WD40-rpts      ______________WD17______________)          (_________________WD18_______________

Query      961 TVSSVSSIAVSASNGAMSTGSGAAQQRLQLPDKRLKPGLRFDTHTHDHDGDVEDISDGERTSSDHGMFYNNLAPSTPTDF 1040
WD40-rpts      _)                                                                              

Query     1041 KVTAMNEDELRKSVRRQKFEKSGLQLTPSALSGNGSSHTASTGTGTSDTEDEGSTPSAENAERSLASTLGGSSENLPQSS 1120
WD40-rpts                                                                                      

Query     1121 TNSFLHAALPEGPGLTTPMERGGSSRRSISAKHNTENGKSVAAPPTITKSYTSTKKEELLQVINKVKQQLENVGHRPLRG 1200
WD40-rpts                                                                                      

Query     1201 SHSISDLSLAANLDGSRNAGGGPGRYQKPGNPKTLNPMPIEESSIRRACSLSDLHMGNFGKPGKSQNGTPQKPQVQHRNG 1280
WD40-rpts                                                                                      

Query     1281 NVSRSASKRNSLQGKTGLGASSNSMNVLNQGSDSEPEDSNRLRSASNGQGRSNGPIAANRQYSNKINNVNNNRRKTPNFS 1360
WD40-rpts                                                                                      

Query     1361 SATPMQDDSSSEETPNSTVNNKPIVPPRPRNLAFDHKSKLMINNSGSPGGNAKQRSGVTSTEDFEGTDPEAQVHNVINKL 1440
WD40-rpts                                                                                      

Query     1441 YTTTQAAMQLHANLKNTLLLKELENALIMSRNMLSSITNRQADKTNNGGGGLGVGGSGGLNHDQLNADNGDYLMMVNNCA 1520
WD40-rpts                                                                                      

Query     1521 DLLSNLRTKHKPDDCENNS 1539
WD40-rpts                         

18 WD40-repeats found in QUERY=FBpp0111924 (Len=1539):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    54-95       3.60  263.44  0.01741       15.0%     45.46
  WD 2:  Seg  6    99-139      6.57  385.88  0.00039       27.5%     55.04
  WD 3:  Seg 10   153-193      7.32  416.95  0.00015       40.0%     54.78
  WD 4:  Seg 14   196-233      5.66  348.49  0.00125       25.0%     53.39
  WD 5:  Seg 18   240-277      3.43  256.46  0.02157       12.5%     25.62
  WD 6:  Seg 22   288-327      6.71  391.76  0.00033        7.5%     45.90
  WD 7:  Seg 27   337-393      5.06  323.70  0.00270       10.0%     46.07
  WD 8:  Seg 30   394-449      5.65  347.98  0.00127       27.5%     47.75
  WD 9:  Seg 37   484-528      7.61  428.82  0.00010       30.0%     50.52
  WD10:  Seg 41   532-573      7.30  416.20  0.00015       35.0%     57.54
  WD11:  Seg 45   579-618      6.87  398.42  0.00027       30.0%     48.66
  WD12:  Seg 48   619-661      6.45  381.00  0.00046       10.0%     58.21
  WD13:  Seg 52   665-706      6.93  401.01  0.00025       25.0%     57.36
  WD14:  Seg 56   710-748      9.45  504.91  9.7e-06       37.5%     58.15
  WD15:  Seg 60   749-801      5.14  327.07  0.00243       20.0%     27.90
  WD16:  Seg 66   840-878      3.55  261.20  0.01865        7.5%     44.87
  WD17:  Seg 70   879-913      3.78  270.92  0.01383       22.5%     39.04
  WD18:  Seg 73   924-962      3.21  247.07  0.02877       17.5%     46.72

Multiple sequence alignment of 18 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   54-95     RSE-----------------KI-----K--LKKVL-----------GLTVC---SNAALD--VSP-----------VS---G--LLAYPA---GCTVVLFN
   WD 2   99-139    -QT-----------------QA-----Y-----LV-----------NTSRK---AFTSVA--FSR-----------CG---R--YVATGECGINPAIKVWE
   WD 3  153-193    -GS-----------------VV-----A-----EF-----------VDHKY---AVTCVA--FSP-----------TG---K--YLVSVGSQHDMIVNVFD
   WD 4  196-233    -AN-----------------LK-----M-----AS-----------NKISS---KVAAVC--FSE-----------DG---S--YFVTVG---NRHVKYWY
   WD 5  240-277    -YK-----------------DP-----I-----PL-----------MGR-S---AILGDL--RDN-----------DF---C--AVACGK--GICAESTYA
   WD 6  288-327    SSR-----------------RL-----L-----DK-----------WVQCR---TTNANC--ICV-----------NE---R--FILVGC--AESIIRIFN
   WD 7  337-393    LPRTHYLGVDVAQGIQINHIMS-----V-----PQ-----------QAKFP---DCIAMV--FDE-----------QR---S--KVSCVY--NDHSLYIWD
   WD 8  394-449    LRD-----------------IS-----RVGKSHSF-----------LYHST---CIWGVE--TVPYNVEREPSQTLPE---E--CFVTCS--SDDTIRVWG
   WD 9  484-528    QGS-----------------SLFDKAGN-----SS-----------YDGRN---GVRCIK--ISP-----------EL---Q--HLASGD--RCGNIRVYS
   WD10  532-573    -LR-----------------LL-----T-----TI-----------EAHES---EVLCLE--YSN-----------EKIERK--LLASAS--RDRLIHVFD
   WD11  579-618    --L-----------------LL-----Q-----TL-----------DDHSS---SITSIK--FVG-----------AG---LNFQMISCG--ADKSIMFRS
   WD12  619-661    FQG--------------NIFMR-----G-----TN-----------TSGKT---TLYDME--VDS-----------NA---K--HILTAC--QDRNVRVYG
   WD13  665-706    -AK-----------------QT-----K-----TF-----------KGSHSDEGSLIKLS--LDP-----------SG---I--YVATSC--TDKTLAVYD
   WD14  710-748    -NE-----------------CM-----A-----RM-----------YGHSE---LVTGLK--FTN-----------DC---R--HLISAS--GDGCIFIWQ
   WD15  749-801    VPH-----------------DM-----I-----VTMQARMSQQRLRSGHAP---LPRPLAPISPP-----------DG---I--VLESPT--SEIEQPQLQ
   WD16  840-878    -GG-----------------SA-----T-----VP-----------GMHAA---SSMGNL--SSS-----------PS---Q--QMTGLA--PRARGRWAQ
   WD17  879-913    RST-----------------QL-----E--------------------TAD---DLRSNS--ESP-----------LG---T--VSSVGG--HSG-VNVQT
   WD18  924-962    -IT-----------------YN-----Q-----TY-----------LSEDS---SIDSGM--ETR-----------RG---E--LKFIGS--SNNGTVVTV

   WD40 Template    TGE-----------------CL-----R-----TL-----------SGHTS---GVTSVS--FSP-----------DG---K--RLVSGS--EDGTIKVWD