Input parameters:

  Query = FBpp0113107 (Len=1071)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0113107, Len=1071):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNFDDEDRLELQFLAGGNIVEHAPVFSPDGRFMFVRCLTKVQVYATSTGELTRVLDDATAPLISLELDLKQPDLLIGCTS 80  
WD40-rpts            (_________________WD 1________________)   (_________________WD 2__________

Query       81 TGELVRWNWRAGVLKKTVSLTLGPGDTILTCHLMDLYKGGDTACAFVTAKGKAGEQVKWFVVNTSTGEKIDVNCGLKLKL 160 
WD40-rpts      _______)                                                          (_____________

Query      161 RVPLVDVGKGQFKYIVLAQGFYIYFVNYETWTFCRYKSAKQHTITCVKMSPCEMVAATADSEGQIFVWRDFEKKDSMTNT 240 
WD40-rpts      _____WD 3_________________)   (_________________WD 4________________)      (____

Query      241 LFHWHHTEVTSLAFSPSGVSIYSGGHECVLVKWTVASPGYRKYLPRMSSVIRHIVVSDDNENVLVCTEDNAIQLISGSDN 320 
WD40-rpts      _____________WD 5________________)   (_________________WD 6________________)    

Query      321 IIKSTVQHFTYETKDKTGQSKFPLGLRLNPRTNTLVLNGRSGHLQFYSAYTKSLLYNLRVVDTNVHNEEANHIIYNTRIT 400 
WD40-rpts             (__________________WD 7_________________)                                

Query      401 RAAFNINWMATGEVYNDLVNFAEVRLKFWHYNERLQSYILNTEIELPHENGFKAIIFSNQFQVDNLRCATAGEDNVVKVW 480 
WD40-rpts                                                  (________________WD 8_______________

Query      481 CITDSENIYKRGTMWSCLAQTSYRNLPIGSLCFSQDGSLLAVGYGNTLALYDARNPRLPLQTLSCPPGLDGVISKAQLRL 560 
WD40-rpts      )             (________________WD 9________________)                            

Query      561 AQTPLNGARKEFTQQRQQLWALLKTLLNSNDENLIQQAKDLIVGPPAKAKLVSEPDNTTKETVFKYIMKMPELGLHQKLQ 640 
WD40-rpts                    (______________________WD10_____________________)                 

Query      641 LLRRFGVECSVPLAHRQRLFQHLQQRAVIPQATKLRLRKLEFRLHRLHTRHRYKAKQRLSHVNNRRQKFENLVPQDVMNL 720 
WD40-rpts                                                                                      

Query      721 FSVLKLDESSKPKKEKTGKCKLNGNSKPNTKAKKIPASAAPLQGLAQISHVQFGAGDQAHLVAVCTESRVLIWNLLTLRL 800 
WD40-rpts                                     (___________________WD11__________________)(_____

Query      801 QAGLKLSVRQLAFDPLTNLMAVITKNDELHVFQPNVPLPLYQRSNLPKTHGLAWLPRRQPRQSSINIDWQAQSTLLMLTH 880 
WD40-rpts      ____________WD12________________)                                               

Query      881 SQEIAYLALPGQSPSDDAPTPISFSQPAATDIILKHATFGIHVIKPQQASGESLEKNGPLIVGREEHSAVNAFVNLSAHT 960 
WD40-rpts                                                                                      

Query      961 MPAMSLICGEFVKSLLIPADSTSRHSSSAASDAALTNGVTVNGNGVGHQDSDGEHEDEELGEEARNTLDTRKTLLEQNEK 1040
WD40-rpts                                                                                      

Query     1041 LVDLPLEGETDLQGLDNRLRTITALRTKLRI 1071
WD40-rpts                                     

12 WD40-repeats found in QUERY=FBpp0113107 (Len=1071):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     7-45       5.06  323.86  0.00269       22.5%     46.27
  WD 2:  Seg  5    49-88       6.38  378.04  0.00050       22.5%     55.44
  WD 3:  Seg 13   147-187      4.01  280.13  0.01040       15.0%     45.36
  WD 4:  Seg 17   191-229      7.49  424.08  0.00012       25.0%     56.66
  WD 5:  Seg 21   236-274      8.13  450.66  5.2e-05       27.5%     46.54
  WD 6:  Seg 24   278-316      7.24  413.80  0.00016       17.5%     48.24
  WD 7:  Seg 28   328-368      6.78  394.52  0.00030       12.5%     39.23
  WD 8:  Seg 37   445-481      7.42  421.22  0.00013       27.5%     36.79
  WD 9:  Seg 40   495-532      6.08  365.70  0.00073       30.0%     54.57
  WD10:  Seg 46   575-623      6.17  369.35  0.00066       15.0%     33.54
  WD11:  Seg 55   752-794      4.13  285.08  0.00893       12.5%     39.89
  WD12:  Seg 58   795-833      5.55  344.10  0.00143       17.5%     42.55

Multiple sequence alignment of 12 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    7-45     DRLE-LQF---------LAGGN--IVEHAPVFSPDG-R-FMFVRC-LTKVQVYA
   WD 2   49-88     -GEL-TRV---------LDDAT--APLISLELDLKQPD-LLIGCTSTGELVRWN
   WD 3  147-187    -GEK-IDV---------NCGLKLKLRVPLVDVGKGQ-F-KYIVLAQGFYIYFVN
   WD 4  191-229    -WTF-CRY---------KSAKQ--HTITCVKMSPCE-M-VAATADSEGQIFVWR
   WD 5  236-274    -SMT-NTL---------FHWHH--TEVTSLAFSPSG-V-SIYSGGHECVLVKWT
   WD 6  278-316    -PGY-RKY---------LPRMS--SVIRHIVVSDDN-E-NVLVCTEDNAIQLIS
   WD 7  328-368    HFTYETKD---------KTGQS--KFPLGLRLNPRT-N-TLVLNGRSGHLQFYS
   WD 8  445-481    ---E-LPH---------ENGFK--AIIFSNQFQVDN-L-RCATAGEDNVVKVWC
   WD 9  495-532    -WSC-LAQ---------TSYRN--LPIGSLCFSQDG-S-LLAVGY-GNTLALYD
   WD10  575-623    QRQQ-LWALLKTLLNSNDENLI--QQAKDLIVGPPA-K-AKLVSEPDNTTKETV
   WD11  752-794    AKKI-PAS-------AAPLQGL--AQISHVQFGAGD-QAHLVAVCTESRVLIWN
   WD12  795-833    -LLT-LRL---------QAGLK--LSVRQLAFDPLT-N-LMAVITKNDELHVFQ

   WD40 Template    TGEC-LRT---------LSGHT--SGVTSVSFSPDG-K-RLVSGSEDGTIKVWD