Input parameters:

  Query = FBpp0288481 (Len=775)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0288481, Len=775):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKLKTRICKKNSIRNSEKVEESSKSTTNCPLSCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHWLL 80  
WD40-rpts                          (_______________WD 1______________)           (_____________

Query       81 LGGRSSGGGKGSDTLLICSNDGRFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQ 160 
WD40-rpts      _____WD 2__________________)  (_________________WD 3________________)  (________

Query      161 NEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTS 240 
WD40-rpts      ________WD 4________________)   (_________________WD 5________________)  (______

Query      241 AAEEYAITSVAFNPEKDYLLVGTFNLLKLCHSNGWSYNTARFSSPRVGSIFNLSWSADGTQATCGTSTGQLIVAYAIEQQ 320 
WD40-rpts      __________WD 6________________)     (_________________WD 7________________)     

Query      321 LVSGNLKATSKSRKSITLKDIATGTQDILDFPQRVVSFGLGYGHLVVATTNQVHIYNEKYINTPIIIDGRNDTRVIEVGK 400 
WD40-rpts                                                                                      

Query      401 KYFMILDALSIWVYTYTGRLHLNPRYPGSQAQIPLLTWRSLSLGLDVLAIRDNSDPTVLHLFDLIPGASRQYDPHSLRAK 480 
WD40-rpts                              (_________________WD 8________________)         (_______

Query      481 QQLVQIAACRAGSPEDQFVAFIDSNRELFVSESRNLNSERIDEIYKIGTQLTAIMWASETNILVGVHDSCYSIWYCPGEG 560 
WD40-rpts      __________WD 9_________________)     (________________WD10________________)     

Query      561 ASDPTIIALTTITLDTTEFGKHITIESFEESVLTFRSAGALLPVNVNMYCEILHRALLEGQWQQALKICRMGQHSSLWAT 640 
WD40-rpts                                                                                      

Query      641 LAAVATRKHQLQISEEAYSAALQIDKVSYLQHLKALTPSSAEQMAENSLMLGRMLEAETILLHGKKIEQAVGLALRMHNW 720 
WD40-rpts                                                                                      

Query      721 RRALEISQKHKGEQPELVPRVLQERRKYLKALQREEWDPLYLPLVAKEEADNTSE 775 
WD40-rpts                                                             

10 WD40-repeats found in QUERY=FBpp0288481 (Len=775):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    21-55       4.96  319.47  0.00308       17.5%     43.08
  WD 2:  Seg  6    67-108      4.96  319.68  0.00306       15.0%     38.64
  WD 3:  Seg  9   111-149      9.77  518.06  6.5e-06       37.5%     55.01
  WD 4:  Seg 13   152-189      5.66  348.29  0.00126       15.0%     55.20
  WD 5:  Seg 17   193-231      8.73  475.44  2.4e-05       30.0%     52.93
  WD 6:  Seg 21   234-271      6.80  395.36  0.00029       27.5%     55.49
  WD 7:  Seg 25   277-315      7.26  414.37  0.00016       22.5%     54.57
  WD 8:  Seg 40   425-463      5.95  360.43  0.00086       12.5%     36.65
  WD 9:  Seg 44   473-512      4.08  283.02  0.00952       12.5%     29.01
  WD10:  Seg 47   518-555      5.23  330.61  0.00218       17.5%     42.54

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   21-55     ------ESSKSTTNCPLSCVDWSSNEE-IYFVSDDHQIFKWS
   WD 2   67-108    LPDDFVPTDMHWLLLGGRSSGGGKGSDTLLICSNDGRFVILN
   WD 3  111-149    -AR--VERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS
   WD 4  152-189    -GM--LRSTVVQNEESIRCARWAPNSNSIVFCQ-GGHISIKP
   WD 5  193-231    -NS--KIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWD
   WD 6  234-271    -GA--NLFTSAAEEYAITSVAFNPEKDYLLVGTFN-LLKLCH
   WD 7  277-315    -YN--TARFSSPRVGSIFNLSWSADGTQATCGTSTGQLIVAY
   WD 8  425-463    -RY--PGSQAQIPLLTWRSLSLGLDVLAIRDNSDPTVLHLFD
   WD 9  473-512    DPH--SLRAKQQLVQIAACRAGSPEDQFVAFIDSNRELFVSE
   WD10  518-555    -SE--RIDEIYKIGTQLTAIMWASETNILV-GVHDSCYSIWY

   WD40 Template    TGE--CLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD