Input parameters:

  Query = FBpp0288575 (Len=773)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0288575, Len=773):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MREPRPLPCWRTEQNLNQSPSPFKGSISTSVQRKPGDGARKMSLWRNLRSLETRNLDVALSQRENILVAGHLPSAIFRER 80  
WD40-rpts                                        (____________________WD 1____________________)

Query       81 LSAAQNLYQRNLTGHYGCVNALEFSSGGQFLASGGDDKRVLLWNIDRELVSKLGKPRSMNEKHASNIFCLGFDTQNSYIF 160 
WD40-rpts      (___________________WD 2___________________)         (_________________WD 3_____

Query      161 SGGNDDLVIQHDLETGKILNHFSHDGPVYGLSVDRISGHLLSVATEHGEILVYDLRAGKSEPLAIAKFKTPFNAVEFHPL 240 
WD40-rpts      ___________)(__________________WD 4__________________)    (_________________WD 5

Query      241 NGNFLATANAKRGAMLWDLRHHQQALCQYNYIPESPSCMSVRFNCNGTLLLTLHRRLPPILYSPGAPEPVATFYHDEYFN 320 
WD40-rpts      _________________)      (_________________WD 6________________)(________________

Query      321 SCTMKSCTFAGPQDELVVSGSDNFNMFIWRLEGVDLDEKNQWMETTPVILAGHRSIVNQVRYNRERCLLASSGVEKIIKL 400 
WD40-rpts      _____WD 7____________________)        (___________________WD 8__________________

Query      401 WSPFAQQGWEGSLTQAEALPYCTRALYRESSDHVSQDFSARSTDEDQVMLAFFDTLVQHELESWSTVDNQNSSKSSTHTS 480 
WD40-rpts      _)(________________WD 9_______________)            (_________________________WD1

Query      481 TCSEASSPTEEPSDEEDQDPQTDRNQNEENVQDQDIDTPNVSELSWQTYPNRIFYLIAKKRRSLLQLAVRGTSRHPRNVD 560 
WD40-rpts      0_________________________)                                                     

Query      561 QLLQRLIGEQKQAATQARISDWLEETQRLFGDDELPTTSAEAAAREQRRRDGVLLCRNRRTQEFKIVETPKSRITQRTRK 640 
WD40-rpts                                                                                      

Query      641 RKLRQLIQTTKHRRATGRPRTTEMDEGSASSDTGASYDSDEEETSSGDNNNNNSNERESVRTDDDGDNSSTTSLTSMEAQ 720 
WD40-rpts                                                                                      

Query      721 FSQAPSTSSSFLFHQLESNNNSQHTSNQNHKALNGLIPDNCNTESTASTSSSM 773 
WD40-rpts                                                           

10 WD40-repeats found in QUERY=FBpp0288575 (Len=773):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    35-80       7.50  424.60  0.00012       22.5%     53.03
  WD 2:  Seg  7    81-124      8.84  479.72  2.1e-05       32.5%     47.22
  WD 3:  Seg 10   134-172      7.91  441.48  7.0e-05       20.0%     46.49
  WD 4:  Seg 13   173-214      6.18  370.15  0.00064       25.0%     55.98
  WD 5:  Seg 17   219-258      6.32  375.87  0.00053       17.5%     48.32
  WD 6:  Seg 20   265-303      6.73  392.82  0.00032       15.0%     44.23
  WD 7:  Seg 23   304-350      5.80  354.22  0.00105       22.5%     46.38
  WD 8:  Seg 28   359-402      8.43  463.01  3.6e-05       30.0%     42.82
  WD 9:  Seg 31   403-439      4.11  284.53  0.00908       10.0%     22.83
  WD10:  Seg 35   452-507      3.61  263.93  0.01714       17.5%     -14.31

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   35-80     PGDGARKMS-L----W----------------RN----LRSLETRNLDVALS-Q-RENILVAGHLPSAIFRER
   WD 2   81-124    LS------A-AQNLYQ----------------RN----LTGHYGCVNALEFS-S-GGQFLASGGDDKRVLLWN
   WD 3  134-172    -G------K-P----R----------------SM----NEKHASNIFCLGFD-T-QNSYIFSGGNDDLVIQHD
   WD 4  173-214    LE------TGK----I----------------LN----HFSHDGPVYGLSVD-RISGHLLSVATEHGEILVYD
   WD 5  219-258    -K------S-E----P----------------LA----IAKFKTPFNAVEFH-PLNGNFLATANAKRGAMLWD
   WD 6  265-303    -A------L-C----Q----------------YN----YIPESPSCMSVRFN-C-NGTLLLTLHRRLPPILYS
   WD 7  304-350    PGAPEPVAT-F----Y----------------HD----EYFNSCTMKSCTFAGP-QDELVVSGSDNFNMFIWR
   WD 8  359-402    KN------Q-W----M----------------ETTPVILAGHRSIVNQVRYN-R-ERCLLASSGVEKIIKLWS
   WD 9  403-439    -P------F-A----Q----------------QG----WEGSLTQAEALPYC-T-RA--LYRESSDHVSQDFS
   WD10  452-507    FF------D-T----LVQHELESWSTVDNQNSSK----SSTHTSTCSEASSP-T-EEPSDEEDQDPQTDRNQN

   WD40 Template    TG------E-C----L----------------RT----LSGHTSGVTSVSFS-P-DGKRLVSGSEDGTIKVWD