Input parameters:

  Query = FBpp0288783 (Len=1076)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0288783, Len=1076):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPQISPNAPLEGNVSPPPTQPHLDDNLHNGNGNGNGIHSSSSNINKHGSNINGNNDSNRSSPAKSPKRPVSSSFRIQNTS 80  
WD40-rpts                                                                                      

Query       81 RYDNDEEDLAASEQVAGGDRQVPDYWQQRNGATTGATSGRQSRAISPGYLDNMSENSEQPPVVPLVRSKSRPEISSAAAS 160 
WD40-rpts                                                                                      

Query      161 RYNNLSYWKARRVVFYRNGDPFFPGVELRYRPGRDVTSLDNLLDKISPKMDLPRGARYVFSMDGDRKYHLDELEDGAFYV 240 
WD40-rpts                                                                                      

Query      241 VSSFKAFKPASYGKKNGMWYASPGNQGWGSKPASRKPSIMEADLGTLSTTSGSIKRSAGRVIRIINNLDHSVQCRVLLNL 320 
WD40-rpts                                                                                      

Query      321 RTSQPFEEVLEDLGQVLKINGAKKMYTGTGQEVRSFSQLRNEFADVDTFYLATGTALIAGSPIRRSRSRPSVVAAAPILP 400 
WD40-rpts                                   (__________________WD 1_________________)          

Query      401 TDELPKVPLRGARPRSKSRPRILYAPESEILRPNGEYTMLDIMKEEPTKVTIRGLRRTFYPPVHHAPADNSPPDKKLQLQ 480 
WD40-rpts           (_________________WD 2________________)                                    

Query      481 WVHGYRGIDARRNLWVLPSGELLYYVAAVAVLFDRDEDAQRHYTGHTEDIMCMDVHPSRELVASGQKAGRDRKSQAHVRI 560 
WD40-rpts                                          (____________________WD 3___________________

Query      561 WSTESLQTLYVFGMGELDSGVTAVAFSQLNGGSYILAVDSGRESILSVWQWQWGHLLGKVATLQEGLSGAAFHPLDDNLI 640 
WD40-rpts      _)(_____________________WD 4_____________________)   (_________________WD 5_____

Query      641 ITHGRGHLAFWHRRKDGFFERTDIVKQPSRSHVTSVQFEPDGDVITADSDGFITIYSVDSDGAYFVRTEFEAHNKGIGCL 720 
WD40-rpts      ___________)         (_______________WD 6_______________)(____________________WD

Query      721 IMLGEGTLLSGGEKDRKIAAWDSLQNYKKIADTKLPEAAGGVRTIYPQRPGRNDGNIYVGTTRNNILEGSLQRRFTQVVF 800 
WD40-rpts       7___________________)        (_________________WD 8_________________)  (_______

Query      801 GHGRQLWGLAAHPDDELYATAGHDKHVALWRKNKLIWTIQTGYECVALAFHPFGTLAAGSTEGHLLVINCENGAVMLTLR 880 
WD40-rpts      __________WD 9________________)(________________WD10________________)   (_______

Query      881 VCGSPLNCVAYNQVGDMIAMGSQNGSIYLFRVSRDGFSYKKVNKIRGSQPLTHLDWSMDGNFVQTVTIDFDLLFWDAKSL 960 
WD40-rpts      __________WD11________________)       (________________WD12________________)    

Query      961 SPERSPIAMKDVKWLTNNCTVGFLVAGQWSNRYYSTTNTIVATCSRSAAHDMLASGDAEGYLRLFRYPCISPRAEFHESK 1040
WD40-rpts                                (_________________WD13_________________)      (_______

Query     1041 VYSGMLACVRFLCGDHTLITVGGTDASLMVWDIVEE 1076
WD40-rpts      __________WD14_________________)    

14 WD40-repeats found in QUERY=FBpp0288783 (Len=1076):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 11   350-390      3.23  248.13  0.02785       17.5%      8.71
  WD 2:  Seg 12   406-444      2.85  232.27  0.04517       12.5%      6.81
  WD 3:  Seg 19   517-562      6.64  389.02  0.00036       20.0%     44.20
  WD 4:  Seg 22   563-610      4.96  319.53  0.00307       27.5%     46.08
  WD 5:  Seg 26   614-652      7.50  424.48  0.00012       20.0%     57.69
  WD 6:  Seg 31   662-697      6.41  379.30  0.00048       35.0%     45.83
  WD 7:  Seg 34   698-742      7.86  439.17  7.5e-05       22.5%     52.26
  WD 8:  Seg 39   751-790      6.07  365.35  0.00074       10.0%     27.88
  WD 9:  Seg 42   793-831      7.63  429.75  0.00010       15.0%     54.73
  WD10:  Seg 46   832-869      6.06  365.03  0.00075       22.5%     54.13
  WD11:  Seg 50   873-911      7.97  443.96  6.5e-05       25.0%     58.50
  WD12:  Seg 54   919-956      5.82  355.22  0.00102       20.0%     54.19
  WD13:  Seg 60   987-1026     7.90  441.11  7.1e-05       22.5%     49.29
  WD14:  Seg 64  1033-1072     5.43  339.05  0.00168       20.0%     52.97

Multiple sequence alignment of 14 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  350-390    -GQ-----E----VRSFSQLRNEFADVDTFY-LATGT----ALIAGSP-------IRRSRSRP
   WD 2  406-444    -KV-----P----LRGARPRSK--SRPRILY-APESE----ILRPNGE-------YTMLDIMK
   WD 3  517-562    -ED-----A----QRHYTGHTE--DIMCMDV-HPSRE----LVASGQKAGRDRKSQAHVRIWS
   WD 4  563-610    TES-----LQTLYVFGMGELDS--GVTAVAF-SQLNGGSYILAVDSGR-------ESILSVWQ
   WD 5  614-652    -GH-----L----LGKVATLQE--GLSGAAF-HPLDD----NLIITHG-------RGHLAFWH
   WD 6  662-697    TDI------------VKQPSRS--HVTSVQF-EPDGD----VITADS--------DGFITIYS
   WD 7  698-742    VDSDGAYFV----RTEFEAHNK--GIGCLIM-LGEGT----LLSGGEK-------DRKIAAWD
   WD 8  751-790    ADT-----K----LPEAAGGVR--TIYPQRP-GRNDG----NIYVGTT-------RNNILEGS
   WD 9  793-831    -RR-----F----TQVVFGHGR--QLWGLAA-HPDDE----LYATAGH-------DKHVALWR
   WD10  832-869    KNK-----L----IWTIQTGYE---CVALAF-HPFGT-----LAAGST-------EGHLLVIN
   WD11  873-911    -GA-----V----MLTLRVCGS--PLNCVAY-NQVGD----MIAMGSQ-------NGSIYLFR
   WD12  919-956    -YK-----K----VNKIRGS-Q--PLTHLDW-SMDGN----FVQTVTI-------DFDLLFWD
   WD13  987-1026   GQW-----S----NRYYSTTNT--IVATCSR-SAAHD----MLASGDA-------EGYLRLFR
   WD14 1033-1072   -RA-----E----FHESKVYSG--MLACVRFLCGDHT----LITVGGT-------DASLMVWD

   WD40 Template    TGE-----C----LRTLSGHTS--GVTSVSF-SPDGK----RLVSGSE-------DGTIKVWD