Input parameters:

  Query = FBpp0288784 (Len=819)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0288784, Len=819):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MWYASPGNQGWGSKPASRKPSIMEADLGTLSTTSGSIKRSAGRVIRIINNLDHSVQCRVLLNLRTSQPFEEVLEDLGQVL 80  
WD40-rpts                                                                                      

Query       81 KINGAKKMYTGTGQEVRSFSQLRNEFADVDTFYLATGTALIAGSPIRRSRSRPSVVAAAPILPTDELPKVPLRGARPRSK 160 
WD40-rpts                                                                          (___________

Query      161 SRPRILYAPESEILRPNGEYTMLDIMKEEPTKVTIRGLRRTFYPPVHHAPADNSPPDKKLQLQWVHGYRGIDARRNLWVL 240 
WD40-rpts      ______WD 1________________)                                                     

Query      241 PSGELLYYVAAVAVLFDRDEDAQRHYTGHTEDIMCMDVHPSRELVASGQKAGRDRKSQAHVRIWSTESLQTLYVFGMGEL 320 
WD40-rpts                         (____________________WD 2____________________)(______________

Query      321 DSGVTAVAFSQLNGGSYILAVDSGRESILSVWQWQWGHLLGKVATLQEGLSGAAFHPLDDNLIITHGRGHLAFWHRRKDG 400 
WD40-rpts      _______WD 3_____________________)   (_________________WD 4________________)     

Query      401 FFERTDIVKQPSRSHVTSVQFEPDGDVITADSDGFITIYSVDSDGAYFVRTEFEAHNKGIGCLIMLGEGTLLSGGEKDRK 480 
WD40-rpts        (________________WD 5________________)(____________________WD 6_______________

Query      481 IAAWDSLQNYKKIADTKLPEAAGGVRTIYPQRPGRNDGNIYVGTTRNNILEGSLQRRFTQVVFGHGRQLWGLAAHPDDEL 560 
WD40-rpts      ____)         (_________________WD 7________________)  (_________________WD 8___

Query      561 YATAGHDKHVALWRKNKLIWTIQTGYECVALAFHPFGTLAAGSTEGHLLVINCENGAVMLTLRVCGSPLNCVAYNQVGDM 640 
WD40-rpts      _____________)(________________WD 9________________)   (_________________WD10___

Query      641 IAMGSQNGSIYLFRVSRDGFSYKKVNKIRGSQPLTHLDWSMDGNFVQTVTIDFDLLFWDAKSLSPERSPIAMKDVKWLTN 720 
WD40-rpts      _____________)       (________________WD11________________)                     

Query      721 NCTVGFLVAGQWSNRYYSTTNTIVATCSRSAAHDMLASGDAEGYLRLFRYPCISPRAEFHESKVYSGMLACVRFLCGDHT 800 
WD40-rpts                  (________________WD12_______________)      (_________________WD13___

Query      801 LITVGGTDASLMVWDIVEE 819 
WD40-rpts      ______________)    

13 WD40-repeats found in QUERY=FBpp0288784 (Len=819):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  9   149-187      6.05  364.69  0.00076       12.5%     29.93
  WD 2:  Seg 18   260-305      6.82  396.25  0.00028       20.0%     46.45
  WD 3:  Seg 21   306-353      5.26  332.03  0.00209       27.5%     46.03
  WD 4:  Seg 25   357-395      7.82  437.49  7.9e-05       20.0%     57.37
  WD 5:  Seg 29   403-440      5.98  361.50  0.00084       32.5%     45.58
  WD 6:  Seg 33   441-485      7.91  441.58  7.0e-05       22.5%     52.83
  WD 7:  Seg 37   495-533      6.10  366.77  0.00071       10.0%     31.85
  WD 8:  Seg 40   536-574      7.89  440.69  7.2e-05       15.0%     53.16
  WD 9:  Seg 44   575-612      6.24  372.48  0.00059       22.5%     53.39
  WD10:  Seg 48   616-654      8.21  453.82  4.8e-05       25.0%     58.26
  WD11:  Seg 52   662-699      6.04  364.30  0.00077       20.0%     54.68
  WD12:  Seg 58   733-769      6.73  392.78  0.00032       22.5%     49.20
  WD13:  Seg 62   776-815      6.03  363.56  0.00078       20.0%     53.09

Multiple sequence alignment of 13 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  149-187    -KV-----P----LRGARPRSKSRPRILY-APESE----ILRPNGE-------YTMLDIMK
   WD 2  260-305    -ED-----A----QRHYTGHTEDIMCMDV-HPSRE----LVASGQKAGRDRKSQAHVRIWS
   WD 3  306-353    TES-----LQTLYVFGMGELDSGVTAVAF-SQLNGGSYILAVDSGR-------ESILSVWQ
   WD 4  357-395    -GH-----L----LGKVATLQEGLSGAAF-HPLDD----NLIITHG-------RGHLAFWH
   WD 5  403-440    -ER-----T----DIVKQPSRSHVTSVQF-EPDGD----VITADS--------DGFITIYS
   WD 6  441-485    VDSDGAYFV----RTEFEAHNKGIGCLIM-LGEGT----LLSGGEK-------DRKIAAWD
   WD 7  495-533    -DT-----K----LPEAAGGVRTIYPQRP-GRNDG----NIYVGTT-------RNNILEGS
   WD 8  536-574    -RR-----F----TQVVFGHGRQLWGLAA-HPDDE----LYATAGH-------DKHVALWR
   WD 9  575-612    KNK-----L----IWTIQTGYE-CVALAF-HPFGT-----LAAGST-------EGHLLVIN
   WD10  616-654    -GA-----V----MLTLRVCGSPLNCVAY-NQVGD----MIAMGSQ-------NGSIYLFR
   WD11  662-699    -YK-----K----VNKIRGS-QPLTHLDW-SMDGN----FVQTVTI-------DFDLLFWD
   WD12  733-769    SN------------RYYSTTNTIVATCSR-SAAHD----MLASGDA-------EGYLRLFR
   WD13  776-815    -RA-----E----FHESKVYSGMLACVRFLCGDHT----LITVGGT-------DASLMVWD

   WD40 Template    TGE-----C----LRTLSGHTSGVTSVSF-SPDGK----RLVSGSE-------DGTIKVWD