Input parameters:

  Query = FBpp0289605 (Len=1470)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0289605, Len=1470):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKKFTFKGVLDGFRQSVQPQATRQEQEIQEQLKADHFTLKKTFRHGFPYSPTSFAFDPVQKLLAIGDKSGYIRILGRPGV 80  
WD40-rpts                                    (____________________WD 1____________________)____

Query       81 DAHAKHEGESECAVLFAQFLVNEGALVTVTADDTIHLWSIRQKTPRIVQSLKFQRERVTCIHLPVGSKWLYVGTEKGNIH 160 
WD40-rpts      _______________WD 2___________________)     (_________________WD 3______________

Query      161 VVHIDTFALSGYIINWNKAIEVVRTSHPGAVIALCDNPLDANKLLIAFECGLLVLWDLKAKCAELRWQAAEAVKSLAWHY 240 
WD40-rpts      __)       (_____________________WD 4____________________)  (_________________WD 

Query      241 EGKYFVSSHTDGSICSWPTKPQAKPQSQVCPHAKINKDGNAEKCKPIYKVDLKSSATGETFTIFSGGMPSEKGSKSNCIT 320 
WD40-rpts      5________________)                                                              

Query      321 VMVGKATTVLEMEHAVCDFITLCENPWPCETQEPYAIAVLLQYDLVLIDLLTPGFPCFESPYPMDLHESPVTCCTYLTDC 400 
WD40-rpts                                                                                      

Query      401 PSDLVPAFYSVGRTTTSKKSCFSEREWPISGGEWSPASCSYSEIVITGHQDGSLKFWDSGAGTLQILYKLKTAKMFEKPR 480 
WD40-rpts                (_____________________WD 6_____________________)                      

Query      481 SHVAHSHPESDNPLAVHLIFLCSESRRLCVAGAMGQVMLFKFRKVESTSEVLVLEIPILYENFDDIYGTSPECDFLTGHQ 560 
WD40-rpts                                                                                      

Query      561 VQKAESSDSDKTAECSLKVRNGAQRKPPGFQSQLVCLTTGPNRRNVQVTSLCISSSYGLMAYGTEYGLVIIDIIQKICLL 640 
WD40-rpts                                                                                      

Query      641 SVACPDLYGAHDPYSRTPKSPKRIENKEEQSRSPSSDQINGSGVATAAPQQQQQQQQQLQQSQQQQQQQLQQQQQQQQQQ 720 
WD40-rpts                                                                                      

Query      721 QQQQQQQQQSLGGDPGDHATSTSAGAATLAGSSIYGADDAGAGVASGGVGVGGISSAISGGFGGAAEPQQQQQVSQQLHQ 800 
WD40-rpts                                                                                      

Query      801 LQQLQQQSQQQQQSFEASCDPWGGECGGGGAGGSGGGGGASGGGGASGAGAQQHQYQHPHPYPHPHPYPHQTSVIQQQQS 880 
WD40-rpts                                                                                      

Query      881 VTSYESLKKSKSQGGSTTEHYSKQQLTATTTTTTTTTIATKYNSKQYKQQQQQNNNLNSNQPNNQIAPLVMKKKNNSHIF 960 
WD40-rpts                                                                                      

Query      961 FYQYTTHTHTNTHFKCNKLDGTFSRSRSSSMSSIDMSSSESVTCLAFIESYAKRNDILTLVPTLWIGTSFGSILTLFITM 1040
WD40-rpts                                                                                      

Query     1041 PERDVRKSQPVLITINGGPVVRLKGSITSMSFLDSYGSIIPYTFETWRDEKRDNKDRTPTKSSSRTSPTFTPTTANTLSN 1120
WD40-rpts                                                                                      

Query     1121 TSVAGGASAGGGAGGGGGAGGGAASGGAAAGGPAGGGAGAGSAAGAAGGVGSGVTSGGGMSSSSASSSGISGSVSTGLET 1200
WD40-rpts                                                                                      

Query     1201 LTDRQYIVIASEKQTKVFDVANQCCINRIQLSEMDFAVKAETITMKDGSCLATYLSNGHLMVHSLPSLKLLLDTDFLPLM 1280
WD40-rpts                                                                                      

Query     1281 ELSFQTKCKQGIVDPMLSIWGQQIIVHEDTTQISKIFCFSHKGHGLYMASPTEIQKFTISSEFCQFILEMMGELYTVHEM 1360
WD40-rpts                                                                                      

Query     1361 PEQPKEGFFKGLFGGGAKLLDREELFGEQSGKPNRSVARHIPGPNLEQLGQRASTAASEISRAHQLAMERGEKLNLLEER 1440
WD40-rpts                                                                                      

Query     1441 AERMANTAQDFSGTAHQLMLKYKDKKWYQL 1470
WD40-rpts                                    

6 WD40-repeats found in QUERY=FBpp0289605 (Len=1470):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    31-76       4.96  319.63  0.00306       25.0%     40.37
  WD 2:  Seg  4    76-119      4.49  300.17  0.00560       22.5%     44.90
  WD 3:  Seg  8   125-163      5.16  327.67  0.00239       25.0%     47.20
  WD 4:  Seg 11   171-217      3.41  255.34  0.02233       25.0%     35.47
  WD 5:  Seg 15   220-258      5.56  344.30  0.00142       27.5%     42.44
  WD 6:  Seg 27   411-458      4.67  307.45  0.00447       25.0%     17.40

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   31-76     QLKADHFTLKKTF-------RHGFPY--------SP-----TSFAFDP-VQKLLAIGDKSGYIRILG
   WD 2   76-119    GRPG------VDA-------HAKH-E--------GESECAVLFAQFLV-NEGALVTVTADDTIHLWS
   WD 3  125-163    -PRI------VQS-------LKFQRE--------RV-----TCIHLPV-GSKWLYVGTEKGNIHVVH
   WD 4  171-217    -GYI------INWNKAIEVVRTSHPG--------AV-----IALCDNPLDANKLLIAFECGLLVLWD
   WD 5  220-258    -AKC------AEL-------RWQAAE--------AV-----KSLAWHY-EGKYFVSSHTDGSICSWP
   WD 6  411-458    VGRT------TTS-------KKSCFSEREWPISGGE-----WSPASCS-YSEIVITGHQDGSLKFWD

   WD40 Template    TGEC------LRT-------LSGHTS--------GV-----TSVSFSP-DGKRLVSGSEDGTIKVWD