Input parameters:

  Query = FBpp0290359 (Len=328)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0290359, Len=328):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPPTETLRPGERGTAGGPGAGAPEQTYIVRQSNKYYEHRDSQATAMSVDYSGQWVLLAGRGHLALQRLGQDDGSLRRHER 80  
WD40-rpts                                    (_________________WD 1_________________)(_________

Query       81 QSKYEVSVAEFAICPSRKEYCAIATSQHIDIVRWGTAEPHYEMSLRGHTRTVTDIDWHGKDPNLLVSCSIDTFSHIWDLR 160 
WD40-rpts      ___________WD 2___________________)   (_________________WD 3_________________)(_

Query      161 EPRKPALSLNAVCMSGATQVGFNRVSGNLLAAAHDGDLRIWDIRKGSCPTHYITAHLNRVHGINWSHKRETCLATASQDG 240 
WD40-rpts      __________________WD 4___________________)(___________________WD 5______________

Query      241 TVKYFDVCNPRRAEKIITTMSPVWRARYTPIGNGLVSIVVPHLGRGENSLLLWSNSKQTDPICSFVGHTDVILDFAWRPN 320 
WD40-rpts      _____)   (____________________WD 6___________________)                          

Query      321 RESSNEIL 328 
WD40-rpts              

6 WD40-repeats found in QUERY=FBpp0290359 (Len=328):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    31-70       9.07  489.41  1.6e-05       10.0%     48.83
  WD 2:  Seg  6    71-115      6.57  386.09  0.00039       22.5%     43.60
  WD 3:  Seg 10   119-158      8.45  463.87  3.5e-05       35.0%     56.37
  WD 4:  Seg 14   159-202      9.08  489.64  1.6e-05       30.0%     52.27
  WD 5:  Seg 18   203-246      7.72  433.49  8.9e-05       25.0%     51.65
  WD 6:  Seg 22   250-294      7.42  421.16  0.00013       22.5%     45.81

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   31-70     QSN----KYY---EHRDSQATAMSVDYSG-QWVL--LAG------RGHLALQRLGQ
   WD 2   71-115    DDG----SLRRHERQSKYEVSVAEFAICP-SRKEYCAIA------TSQHIDIVRWG
   WD 3  119-158    -PH----YEM---SLRGHTRTVTDIDWHGKDPNL--LVS------CSIDTFSHIWD
   WD 4  159-202    LREPRKPALS---LNAVCMSGATQVGFNR-VSGN--LLA------AAHDGDLRIWD
   WD 5  203-246    IRK-GSCPTH---YITAHLNRVHGINWSH-KRET-CLAT------ASQDGTVKYFD
   WD 6  250-294    -PR----RAE---KIITTMSPVWRARYTP-IGNG--LVSIVVPHLGRGENSLLLWS

   WD40 Template    TGE----CLR---TLSGHTSGVTSVSFSP-DGKR--LVS------GSEDGTIKVWD