Input parameters:

  Query = FBpp0290541 (Len=576)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0290541, Len=576):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEYIFKKERRSFGARVHFEDKDEVVFTENSNPELVKSYILKNPVDRVTQYAGQTSLSVANTERATYKSTGITHNEGGWPK 80  
WD40-rpts                                                                                      

Query       81 DINMHDPEQTVRYKRKIEKDENYITQVMNLTKPMEHYIHQNNAVNIYENYFENLDPAPLPEPCKSRTVNVYRDPNPIKVP 160 
WD40-rpts                                                                                      

Query      161 VKHLSWSPDGGIKMAVSHCDMRFQGDKSNQKCNSYIWEVENPNEPFLTLEPKVPCVCLEYNQKDPTSLVSGMYNGQVAAW 240 
WD40-rpts                                                (_________________WD 1________________

Query      241 DTRHGKLPVMISEREVCHRDPVNSVLWNNSKSGTEFFSGGSDGQVLWWDTRKLTEPLDRLLMDPVKSDDQDLSRSYGISV 320 
WD40-rpts      )(_____________________WD 2_____________________)                               

Query      321 LEYETTIPTRFMAGTEMGMLFSCNRKGKTPTEKIQIRMMCHLGPVYAITRNPAFVKNFLTVGDWCARIWSEDCRESSIIW 400 
WD40-rpts                                     (_________________WD 3________________)(_________

Query      401 TKSSSSMLTDGAWSYTKVSQFFITRMDGVLDTWDLLQQQNEPVLTVKVCDEPLYCVRTNENGKFVSCGSQLGATFLVEVS 480 
WD40-rpts      __________WD 4___________________)     (_________________WD 5________________)  

Query      481 DNMVMSAKNDKPLLTAMFERENRREKILEAKSRESKLKVKANHGQDQGDTMMVNGKINMAPFEAACEQAASEYFAAVEQE 560 
WD40-rpts                                                                                      

Query      561 RQRRLPGGKRRGCGGG 576 
WD40-rpts                      

5 WD40-repeats found in QUERY=FBpp0290541 (Len=576):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 10   203-241      3.55  261.30  0.01859       30.0%     51.53
  WD 2:  Seg 14   242-289      4.75  310.90  0.00402       32.5%     49.98
  WD 3:  Seg 22   352-390      4.61  305.25  0.00478       12.5%     41.04
  WD 4:  Seg 25   391-434      3.45  257.10  0.02115       17.5%     54.18
  WD 5:  Seg 29   440-478      3.83  273.03  0.01295       20.0%     55.29

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  203-241    -N---E------PFLTLEPKVPCVCLEYN--QKDP-TSLVSGMYNGQVAAWD
   WD 2  242-289    TR---HGKLPVMISEREVCHRDPVNSVLWNNSKSG-TEFFSGGSDGQVLWWD
   WD 3  352-390    -E---K------IQIRMMCHLGPVYAITR--NPAF-VKNFLTVGDWCARIWS
   WD 4  391-434    EDCRES------SIIWTKSSSSMLTDGAW--SYTKVSQFFITRMDGVLDTWD
   WD 5  440-478    -N---E------PVLTVKVCDEPLYCVRT--NENG-KFVSCGSQLGATFLVE

   WD40 Template    TG---E------CLRTLSGHTSGVTSVSF--SPDG-KRLVSGSEDGTIKVWD