Input parameters:

  Query = FBpp0291670 (Len=419)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0291670, Len=419):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKWTTANTKHVNYTAKHELYVGTHTGSFKHLVPASEKTPYGQSNLSDLCALDKDSRVTSLAFGNDDQTEILLGRAKDAVE 80  
WD40-rpts                                      (_______________________WD 1____________________

Query       81 IHSFTEKGHSRNTVSFNAAPIVGLARYNDKLIAGIGNGEIQSLELEANDESEPVVIATGDQMDHLRQCAQVKSIVATGGK 160 
WD40-rpts      __)    (________________WD 2_______________)     (__________________WD 3________

Query      161 ERQNNLKVYDLNADGKQIFTSKNLPNDYLQLEVPVWDSDIGFVDGPSVLATCSRTGYVRIYDTRKQRRPVACFASEEHGM 240 
WD40-rpts      _________)          (__________________WD 4__________________)(_________________

Query      241 SFTTLVAKGNFIYTGTTMGALKAFDTRRMKTHVHTYKGFTGGISDLHLDATGRFLSSASLDRYVRIHDSETTVLLYQCYV 320 
WD40-rpts      __WD 5__________________)    (_________________WD 6________________)            

Query      321 KSKATKILIRPFENEARVTEEPEEVADLQMDRNVSENKSVNATSVDNEYEDMFDQMPTVGDSDNESEEEMSNIKLSKADL 400 
WD40-rpts                                                                                      

Query      401 KRRSSEKSLKNKKKKVVIS 419 
WD40-rpts                         

6 WD40-repeats found in QUERY=FBpp0291670 (Len=419):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    33-83       5.43  339.00  0.00168       17.5%     49.79
  WD 2:  Seg  7    88-124      4.61  305.19  0.00479       17.5%     52.45
  WD 3:  Seg 11   130-170      5.25  331.42  0.00213       10.0%     50.56
  WD 4:  Seg 16   181-222      6.17  369.34  0.00066       12.5%     38.14
  WD 5:  Seg 19   223-265      8.21  453.92  4.7e-05       17.5%     55.15
  WD 6:  Seg 23   270-308      8.93  483.39  1.9e-05       25.0%     55.64

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   33-83     PA---SEKTPYGQSNLSDLCALDKDSR--VTSLAFGNDDQTEILLGRA--KDAVEIHS
   WD 2   88-124    -G---H----------SRNTVSFNAAP--IVGL--A-RYNDKLIAGIG--NGEIQSLE
   WD 3  130-170    -E---S----------EPVVIATGDQM--DHLRQCA-QVKSIVATGGKERQNNLKVYD
   WD 4  181-222    SK---N----------LPNDYLQLEVPVWDSDIGFV-DGPSVLATCSR--TGYVRIYD
   WD 5  223-265    TRKQRR----------PVACFASEEHG--MSFTTLV-AKGNFIYTGTT--MGALKAFD
   WD 6  270-308    -K---T----------HVHTYKGFTGG--ISDLHLD-ATGRFLSSASL--DRYVRIHD

   WD40 Template    TG---E----------CLRTLSGHTSG--VTSVSFS-PDGKRLVSGSE--DGTIKVWD