Input parameters:

  Query = FBpp0292338 (Len=638)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (FBpp0292338, Len=638):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAAAADLVVPTLAIRSSVAVELWSSAGSKQPFEHKPHLPREETKSSRSICFSSNGRYFAYSNGQEVKVLQASRDSAASWP 80  
WD40-rpts                              (____________________WD 1____________________)          

Query       81 VICVLPRPKAFYLQFSPRGSYLCTWEHYAITKDRPEGSPNLLVYEVATGVEVFAIVQKNQADWQPSWSADESIFALVVGG 160 
WD40-rpts           (_________________WD 2_________________)   (________________WD 3___________

Query      161 EALFYDLGEGAEKGFATTSRKIGGSRGGMLSLGPGNCPPFLAFYTPGAKGAPSMCKLYKYPALGQNQTVACKSFFQADRV 240 
WD40-rpts      _____)(________________________WD 4_______________________)                     

Query      241 EMLWNKRGSGLLLLTSTEVDKSGASYYGNQAVHFMATKGDTCSVPLSKEGPVHCVKWSPKATEFVVVYGFMPSKAALYNL 320 
WD40-rpts                                            (__________________WD 5_________________) 

Query      321 KCDVVFDFGEGPRNCAYFNPFGNLIALAGFGNLPGAVEVWDVSKREKLANLKCADTTVFEWHPNGEWFVTATTAPRLRIS 400 
WD40-rpts                                               (_________________WD 6_________________

Query      401 NGFKVYHYSGALLHETMWPQGQELLGIEWQQFADKTFSEPKITKAKHEGIKSSQPEASKKAYTPPHLRLLKEGKNPEKYL 480 
WD40-rpts      )                                                                               

Query      481 PQPSIPGLAPTAAAGGVNGNKRNNKNKQRSARKDVNVVNGGDADSAPTEVVDQAAPVARQSPVFVAAEERKPQHTPRQKY 560 
WD40-rpts                                                                                      

Query      561 QPDNAADQPPNSYGQGHPNGQHISDKERKIRSVAKKLSDIKKLKVRRSQGENLELNQLNKIKMEAQYLDELKALKQSA 638 
WD40-rpts                                                                                    

6 WD40-repeats found in QUERY=FBpp0292338 (Len=638):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    25-70       3.07  241.36  0.03425       17.5%     39.90
  WD 2:  Seg  7    86-125      2.81  230.92  0.04706        7.5%     26.23
  WD 3:  Seg 10   129-166      2.86  232.61  0.04469       15.0%     41.07
  WD 4:  Seg 13   167-219      2.78  229.43  0.04922       20.0%     30.97
  WD 5:  Seg 22   279-319      3.92  276.75  0.01155       17.5%     49.44
  WD 6:  Seg 29   362-401      4.02  280.53  0.01028       10.0%     44.57

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   25-70     SAG--------SKQPFEHKPHLPREETKSSRSICFSSNGRY--FA-----YSN-GQEVKVLQ
   WD 2   86-125    PRP--------KAFYLQ-------FSPRGSYLCTWEHYAIT--KD-----RPEGSPNLLVYE
   WD 3  129-166    -GV--------EVFAIV-------QKNQADWQPSWSADESI--FA-----LVV-GGEALFYD
   WD 4  167-219    LGEGAEKGFATTSRKIG-------GSRGGMLSLGPGNCPPF--LAFYTPGAKGAPSMCKLYK
   WD 5  279-319    -GD--------TCSVPL-------SKEGPVHCVKWSPKATEFVVV-----YGFMPSKAALYN
   WD 6  362-401    VSK--------REKLAN-------LKCADTTVFEWHPNGEW--FV-----TATTAPRLRISN

   WD40 Template    TGE--------CLRTLS-------GHTSGVTSVSFSPDGKR--LV-----SGSEDGTIKVWD