Input parameters:
Query = FBpp0293270 (Len=1544)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (FBpp0293270, Len=1544):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSEGSGSENAAAAEAAAEAEAATEAALMAEAVAVAYQSDEEEQPEAEDMPEQAGDNQEEDAAEQQDGGEPEADEDADADD 80
WD40-rpts
Query 81 AMSVENAENESDSGGNAEETAAADRRQATKKELTQIIDKWEQQQTQNGYDPVPTLRSLAEIFEREKDVYRRKDPDPLDSR 160
WD40-rpts
Query 161 HPYRADPSCQYGLLLKLLFRKDTFMGKLLNDYLRENYFSRQNVSRSSLELNILACRLILEIMPGMETSAVFQTAEGDGTI 240
WD40-rpts
Query 241 NRIYSWAEDSIEPLQSYATGLLAEAMEVSDIAINFRDLNIRLVPKMIKRLHMLLAISKSATSDVNTSMHNLSADSSTAGM 320
WD40-rpts
Query 321 LSWVACASNASAPQSPQHNGSGLGASSSQHGDASNMSILFENSRDAFSVSRYYKRMYIPLHPATADTSQMLIMRFLTSLG 400
WD40-rpts
Query 401 EYQEFLAMAFENNVMQLIFGYLENLDRRDTCLAYEVLKYLASLLCHKKFALEFISHGGLELLLKVPRPSLATTGVSIAIY 480
WD40-rpts
Query 481 YLAYCEDAMERICSMQRPLISELVRYALWILGRCHDSSKCHATMFFSLSFQFKVILDEFDAQDGLRKLYNVISVLKILDP 560
WD40-rpts
Query 561 SHNDSDNDSDFNEDVECASRQMVRHVCVALKRYMEAHFFYKYNSFLCQTNAASPAPSSAHYFNQNPTVAAKLTFDQLNDQ 640
WD40-rpts
Query 641 IRTLQEHTSIRAHWQPVDQLMKLGGITMLLRIIAFSYDWVNSGRSETVRSALDVLSVCCIIPRVYVVLCERLLMLDKTTT 720
WD40-rpts
Query 721 SGFCSVLGAAAGEISSDAEVIKSALAVLCHCVCSPIIRKDSGTSLIKFGTSSRKNKANHKYAEELIERVWESVCSNNGIV 800
WD40-rpts
Query 801 VLLSLMQTKGPITDADCIRGMACRALAGLARSDRVRQIVSKLPLFASGQLQTLMRDPILQEKRAEHVIFQKYALELLERV 880
WD40-rpts
Query 881 SGKTKPLNNPLDPSLSNMHKANVIAQTRIQYNKQQLYQLIFEHLESNGLSQTAQMLQREVGLPLQTPTTRSFHQSPFDYK 960
WD40-rpts
Query 961 SLPSGSSSLSRNRLRSRMQDVNAAIMGNGDLNRSFGEDSSPAGAGGSNAGDGVSIPNFSSLNTTQTPIKIRRTDRSSVSR 1040
WD40-rpts
Query 1041 SIQKQAMEPGGMSVGLAEDGQLHPKRITLNTIVTEYLTNQHSLCNNPVTTCPQFDLYEPHKCPDPKPSRLLSSNYNLTSR 1120
WD40-rpts
Query 1121 HARTQAGFNTSRFDRRYVHTHFSPWRSIRSADYEDLEFTCCDLAGKYIIVGTQQGDGRVFNMNDGVEQFFSNCHNFSVDA 1200
WD40-rpts (__________________WD 1_________________) (_______________
Query 1201 IKANRAGDLVITSSFWRTPTSILWSIADDEFKLKLRLPDVTYCEFSQTVQDRLLGTQNECATLFDINTGSKVASFTPTIP 1280
WD40-rpts ___WD 2_________________)(_________________WD 3_________________)
Query 1281 NLYTKNRATLCRTDELILSDGVLWDVRSGKEIHKFDKFNQCISGVFHPNCLEIIANTEVWDLRTFHLLQTVPVLDQRNCT 1360
WD40-rpts (________________WD 4________________) (__________
Query 1361 FSPMHVIYGASLGADRDHDMETTTYDTSFNVLDAYDYSSIATIDVKRNINDLSVSANGSLIAVVEDYSGYESKQETYVKI 1440
WD40-rpts _________WD 5___________________)
Query 1441 YAVGVKKSERSEEEDDEEVPESDEDGSDTGSENTFAIGQNLLGFPLLRNLHGSDNDDEDLDEDDDDGEPLDSDDDSDDDD 1520
WD40-rpts
Query 1521 GSDNGDDDGDFDVLEYFDRSSSDD 1544
WD40-rpts
5 WD40-repeats found in QUERY=FBpp0293270 (Len=1544):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 8 1141-1181 4.88 316.26 0.00340 15.0% 46.54
WD 2: Seg 11 1185-1225 5.10 325.38 0.00256 17.5% 47.88
WD 3: Seg 15 1226-1265 6.14 368.23 0.00068 17.5% 43.61
WD 4: Seg 23 1309-1346 3.51 259.66 0.01955 12.5% 34.43
WD 5: Seg 26 1350-1393 4.15 286.28 0.00860 17.5% 28.37
Multiple sequence alignment of 5 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 1141-1181 HFSPWR----SIRSADYEDLEFTCCDLAGKYIIVGT--QQGDGRVFN
WD 2 1185-1225 -GVEQF----FSNCHN-FSVDAIKANRAGDLVITSSFWRTPTSILWS
WD 3 1226-1265 IADDEF----KLKLRL-PDVTYCEFSQTVQDRLLGT--QNECATLFD
WD 4 1309-1346 -GKEIH----KFDKFN-QCISGV-FHPNCLEIIANT--EVWDLRTFH
WD 5 1350-1393 TVPVLDQRNCTFSPMH-VIYGASLGADRDHDMETTT--YDTSFNVLD
WD40 Template TGECLR----TLSGHT-SGVTSVSFSPDGKRLVSGS--EDGTIKVWD