Input parameters:
Query = FBpp0293677 (Len=343)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (FBpp0293677, Len=343):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSSTAGKRKEIYKYLAPWPLYSMNWSVRPDKRFRLALGSFIEEYNNKVQIISLDEDTSEFSAKSTFDHPYPTTKIMWIPD 80
WD40-rpts (_____________________WD 1_
Query 81 SKGVYPDLLATSGDYLRVWRAGEPDTRLECVLNNNKNSDFCAPLTSFDWNEVDPNLVGTSSIDTTCTIWGLETGQPHARV 160
WD40-rpts ___________________) (________________WD 2________________)
Query 161 YVAGHVKTQLIAHDKEVYDIAFSRAGGGRDMFASVGADGSVRMFDLRHLEHSTIIYEDPAHTALLRLAWNKQDPNYLATV 240
WD40-rpts (__________________WD 3__________________) (_________________WD 4_______
Query 241 AMDSCEVIILDVRVPCTPVARLSNHRACVNGIAWAPHSSCHICTAGDDHQALIWDIQQMPRAIEDPILAYTAAEGEVNQI 320
WD40-rpts __________) (_________________WD 5_________________) (________________
Query 321 QWGATQPDWIAICYNKACEILRV 343
WD40-rpts _WD 6________________)
6 WD40-repeats found in QUERY=FBpp0293677 (Len=343):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 5 54-100 4.22 289.13 0.00788 17.5% 33.57
WD 2: Seg 10 113-150 5.54 343.60 0.00146 20.0% 45.14
WD 3: Seg 14 164-205 6.76 393.94 0.00031 27.5% 52.68
WD 4: Seg 18 212-251 3.94 277.29 0.01136 15.0% 50.25
WD 5: Seg 21 256-295 6.51 383.65 0.00042 20.0% 50.27
WD 6: Seg 25 304-342 4.17 286.99 0.00842 2.5% 45.41
Multiple sequence alignment of 6 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 54-100 DEDTSEFSAKSTFDHPYPTTKIMWIP-DS---K-GVYPDLLATSGDY-LRVWR
WD 2 113-150 NNN-------KNSDFCAPLTSFDWNEVDP---N-LVGT---SSIDTT-CTIWG
WD 3 164-205 -GH----VKTQLIAHDKEVYDIAFSR-AGGGRD-MFAS---VGADGS-VRMFD
WD 4 212-251 -ST----IIYEDPAHTALLRLAWNKQ-DP---N-YLAT---VAMDSCEVIILD
WD 5 256-295 -CT----PVARLSNHRACVNGIAWAP-HS---SCHICT---AGDDHQ-ALIWD
WD 6 304-342 -ED----PILAYTAAEGEVNQIQWGA-TQ---P-DWIA---ICYNKA-CEILR
WD40 Template TGE----CLRTLSGHTSGVTSVSFSP-DG---K-RLVS---GSEDGT-IKVWD