Input parameters:

  Query = ENSDARP00000003004 (Len=495)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000003004, Len=495):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDQDYERRLLRQINVQNDNTSPMKAKDVICHLTPTPESPLSSPSKHGDRFIPSRAGANWSINFHRINENEKSPSQNKKTK 80  
WD40-rpts                                                                                      

Query       81 DATSDSGKADGLAYSALLKNELLGAGIEKVLDPQTEDRRLQPSTPERRSLFSYSLSAKRSTPDDNSVSPYSLSPVSSKSQ 160 
WD40-rpts                                                                                      

Query      161 KLLRSPRKPTRKISKIPFKVLDAPELQDDFYLNLVDWSSLNVLSVGLGTCVYLWSACTSQVTRLCDLSVEGDSVTSVGWS 240 
WD40-rpts                                                             (___________________WD 1_

Query      241 ERGNLVAVGTHKGFVQIWDATAGKKLFALEGHTARVGALAWNADQLSSGSRDRMILQRDIRTPPLQSERRLQGHRQEVCG 320 
WD40-rpts      __________________)   (________________WD 2_______________)(___________________W

Query      321 LKWSTDHQLLASGGNDNKLLVWNHSSVLPMQQYTEHLAAVKAIAWSPHQHGLLASGGGTADRCIRFWNTLTAQPLQCIDT 400 
WD40-rpts      D 3___________________)   (__________________WD 4__________________)   (________

Query      401 GSQVCNLAWSKHTNELVSTHGYSQNQILVWKYPSLTQVAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWNVFSKTRS 480 
WD40-rpts      _________WD 5_________________)   (_________________WD 6________________)       

Query      481 TKESVSVLNLFTRIR 495 
WD40-rpts                     

6 WD40-repeats found in QUERY=ENSDARP00000003004 (Len=495):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   216-259      7.88  440.26  7.2e-05       32.5%     54.04
  WD 2:  Seg  9   263-299      7.00  403.65  0.00023       37.5%     52.22
  WD 3:  Seg 13   300-343      8.86  480.83  2.1e-05       32.5%     50.89
  WD 4:  Seg 17   347-388      6.88  398.72  0.00026       22.5%     41.51
  WD 5:  Seg 21   392-431      5.08  324.65  0.00262       27.5%     49.04
  WD 6:  Seg 25   435-473      9.35  500.76  1.1e-05       32.5%     54.07

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  216-259    AC----TSQVTRLCDLSVEGDSVTSVGWSERGNLVAV---GTHKGFVQIWD
   WD 2  263-299    -G----KK----LFALEGHTARVGALAWNAD--QLSS---GSRDRMILQRD
   WD 3  300-343    IRTPPLQS----ERRLQGHRQEVCGLKWSTDHQLLAS---GGNDNKLLVWN
   WD 4  347-388    -V----LP----MQQYTEHLAAVKAIAWSPHQHGLLASGGGTADRCIRFWN
   WD 5  392-431    -A----QP----LQCIDTG-SQVCNLAWSKHTNELVS-THGYSQNQILVWK
   WD 6  435-473    -L----TQ----VAKLTGHSYRVLYLAMSPDGEAIVT---GAGDETLRFWN

   WD40 Template    TG----EC----LRTLSGHTSGVTSVSFSPDGKRLVS---GSEDGTIKVWD