Input parameters:

  Query = ENSDARP00000003173 (Len=364)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000003173, Len=364):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFVAKSIAADHKDLIHDVSYDFHGRRMATCSSDQSVKVWDKGDDGEWHCTASWKTHSGSVWRVTWAHPEFGQVLASCSFD 80  
WD40-rpts      (_________________WD 1_________________)(_____________________WD 2______________

Query       81 RTAAVWEEIVGESNDKQRGQSHWIKRTTLVDSRTSVTDVKFAPKHMGLMLTTCSADGVVRIYEAPDVMNLSQWSLQHEIS 160 
WD40-rpts      ______)               (__________________WD 3_________________)(________________

Query      161 CKLACSCISWNPSSSRAHPPMIAVGGDDSNGAYSGKVQIHEYNENTRKYAKAETLMTVTDPVHDIAFAPNLGRSFHVLAI 240 
WD40-rpts      __________WD 4__________________________)       (___________________WD 5________

Query      241 ATKDVRIFKLLPLRRESANSSGPTKFEVQVMAQFDSHNSQVWRVSWNITSTLLASSGDDGCVRLWKANYMDNWKCTGILR 320 
WD40-rpts      __________)                (_________________WD 6________________)              

Query      321 GDGSPVNGSSGPSAALSAVGVPGAAQMIVGAATAGRKKAQLMPG 364 
WD40-rpts        (_________________WD 7________________)   

7 WD40-repeats found in QUERY=ENSDARP00000003173 (Len=364):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-40      10.45  546.23  2.7e-06       27.5%     54.97
  WD 2:  Seg  5    41-87       7.63  429.91  1.0e-04       32.5%     54.30
  WD 3:  Seg  9   103-143      6.86  397.84  0.00027       30.0%     58.37
  WD 4:  Seg 13   144-201      5.22  330.32  0.00220       15.0%     35.50
  WD 5:  Seg 17   209-251      6.27  373.53  0.00058       22.5%     45.71
  WD 6:  Seg 21   268-306      8.26  455.78  4.5e-05       25.0%     57.76
  WD 7:  Seg 25   323-361      6.95  401.85  0.00024       17.5%     36.90

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-40     MFV-------AKSIAADHKDLIHDVSYD--FH----GRR-----------MATCSSDQSVKVWD
   WD 2   41-87     KGD--DGEWHCTASWKTHSGSVWRVTWAHPEF----GQV-----------LASCSFDRTAAVWE
   WD 3  103-143    -WI-------KRTTLVDSRTSVTDVKFA--PK--HMGLM-----------LTTCSADGVVRIYE
   WD 4  144-201    APDVMNLSQWSLQHEISCKLACSCISWN--PS----SSRAHPPMIAVGGDDSNGAYSGKVQIHE
   WD 5  209-251    -YA-------KAETLMTVTDPVHDIAFA--PNLGRSFHV-----------LAIATKDVRIFKLL
   WD 6  268-306    -VQ-------VMAQFDSHNSQVWRVSWN--IT----STL-----------LASSGDDGCVRLWK
   WD 7  323-361    -GS-------PVNGSSGPSAALSAVGVP--GA----AQM-----------IVGAATAGRKKAQL

   WD40 Template    TGE-------CLRTLSGHTSGVTSVSFS--PD----GKR-----------LVSGSEDGTIKVWD