Input parameters:

  Query = ENSDARP00000003237 (Len=490)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000003237, Len=490):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSAQITCVGWVKRGVAKETPDKVELSKEELQRIISEAKEELRDRDEEEEEDEADEGVVSGLDSKEEASAPATVEEGIKKK 80  
WD40-rpts                                                                                      

Query       81 EDGNEEDDELAEYDLDKYDEEDIATSNLGDSLAGLTVFGTNEEDPYVTIKDTDQYEREDFQIKPTDNLILAGRAEKECCN 160 
WD40-rpts                                                    (_______________WD 1______________

Query      161 LEIHVYNSEEDSLYVHHDILLPAYPLCVEWLNFDPNPEEQQGNYAAVGNMTPVIDVWDLDVVDCLEPAFSLGSKKEKKKK 240 
WD40-rpts      _)     (_______________________WD 2______________________)                      

Query      241 KKAKKAAEPIEGHTDAVLDLSWNRLVRNVLASASADETVILWDLEKGKPAATLAKHTDKVQTLKFHPFEAQTLISGSFDK 320 
WD40-rpts        (__________________WD 3_________________)   (_________________WD 4____________

Query      321 SVILYDCRSPDDSHRIWRFSGQVERVTWDHFSPCNFLASTEDGFIYCLDARSDKPVFTLRAHDGEVSGMDLSSQIRGCLV 400 
WD40-rpts      _____)   (_________________WD 5_________________)   (_________________WD 6______

Query      401 TCSADKHVKIWDILGNKPNLIHSRDMKMGVLFCGSCCPDLPFVYAFGGQREGLRVWDISDVAAVAEVFGSRERLVANTVS 480 
WD40-rpts      ___________)     (_________________WD 7_________________)                       

Query      481 GASSSDMDVS 490 
WD40-rpts                

7 WD40-repeats found in QUERY=ENSDARP00000003237 (Len=490):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   127-162      4.54  302.38  0.00523        5.0%     38.39
  WD 2:  Seg  6   168-218      6.26  373.42  0.00058       27.5%     48.38
  WD 3:  Seg 10   243-283      9.84  521.03  5.9e-06       30.0%     45.69
  WD 4:  Seg 13   287-326      8.55  467.72  3.1e-05       35.0%     52.73
  WD 5:  Seg 17   330-369      6.41  379.53  0.00048       17.5%     47.63
  WD 6:  Seg 20   373-412      7.92  441.76  6.9e-05       30.0%     53.34
  WD 7:  Seg 24   418-457      6.16  369.19  0.00066       17.5%     56.04

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  127-162    ----------VTIKDTDQYEREDFQIKP-T-----DN-L-ILAGRAEKECCNLE
   WD 2  168-218    SEEDSLYVHHDILLPAYPLCVEWLNFDP-NPEEQQGN-Y-AAVGNMTPVIDVWD
   WD 3  243-283    AKK------AAEPIEGHTDAVLDLSWNRLV-----RN-V-LASASADETVILWD
   WD 4  287-326    -GK------PAATLAKHTDKVQTLKFHPFE-----AQ-T-LISGSFDKSVILYD
   WD 5  330-369    -PD------DSHRIWRFSGQVERVTWDHFS-----PC-N-FLASTEDGFIYCLD
   WD 6  373-412    -DK------PVFTLRAHDGEVSGMDLSS-Q-----IRGC-LVTCSADKHVKIWD
   WD 7  418-457    -PN------LIHSRDMKMGVLFCGSCCP-D-----LP-FVYAFGGQREGLRVWD

   WD40 Template    TGE------CLRTLSGHTSGVTSVSFSP-D-----GK-R-LVSGSEDGTIKVWD