Input parameters:

  Query = ENSDARP00000003589 (Len=305)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000003589, Len=305):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPCERKPMRYGHSEGHTDVCFDDQGKCIVTCGSDGDVRIWESLDDDDPKSINVGEKVYSVALKNGKLVTAVSNNTVQIHT 80  
WD40-rpts         (________________WD 1________________)   (_______________WD 2_______________)

Query       81 FPDGEPDGILTRFTTNANHVTFNNSGSRVAAGSSDFLVKMVEVADSSQQKTLRGHDAPVLSVALDPSDEFLASSSCDGSV 160 
WD40-rpts         (_________________WD 3________________)   (_________________WD 4_____________

Query      161 AVWSIESQTQVAQWKVLQKSSDVTNAKSLCRLAWQPRSGKLIAVPVDLTIQLYERNTWTHVSTLSDDLITQVVNVVVWSP 240 
WD40-rpts      ___)            (________________WD 5________________)   (__________________WD 6

Query      241 CGKFLAAGTVGGNLLIWDVEAKLCIDRQKHEKGFTVCGMAWHPSGGRIAYTDTEGCYSSSVKGEH 305 
WD40-rpts      _________________)   (___________________WD 7___________________)

7 WD40-repeats found in QUERY=ENSDARP00000003589 (Len=305):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     4-41       9.66  513.88  7.4e-06       32.5%     47.16
  WD 2:  Seg  4    45-80       5.20  329.51  0.00225       15.0%     51.15
  WD 3:  Seg  8    84-122      9.55  509.22  8.5e-06       30.0%     56.99
  WD 4:  Seg 12   126-164     10.13  532.94  4.1e-06       37.5%     56.89
  WD 5:  Seg 17   177-214      7.91  441.45  7.0e-05       12.5%     44.81
  WD 6:  Seg 20   218-258      8.56  468.05  3.1e-05       37.5%     58.50
  WD 7:  Seg 24   262-305      5.79  353.84  0.00106       17.5%     42.92

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    4-41     --ERKPMRYGH--SE-GHTDVCFDDQGKCIVT----CGSDGDVRIWE
   WD 2   45-80     -DDDPKSINVG--EK--VYSVALKNG--KLVT----AVSNNTVQIHT
   WD 3   84-122    -GEPDGILTRF--TT-NANHVTFNNSGSRVAA----GSSDFLVKMVE
   WD 4  126-164    -SSQQKTLRGH--DA-PVLSVALDPSDEFLAS----SSCDGSVAVWS
   WD 5  177-214    LQK--SSDVTN--AK-SLCRLAWQPRSGKLIA----VPVDLTIQLYE
   WD 6  218-258    -WTHVSTLSDDLITQ-VVNVVVWSPCGKFLAA----GTVGGNLLIWD
   WD 7  262-305    -KLCIDRQKHE--KGFTVCGMAWHPSGGRIAYTDTEGCYSSSVKGEH

   WD40 Template    TGECLRTLSGH--TS-GVTSVSFSPDGKRLVS----GSEDGTIKVWD