Input parameters:
Query = ENSDARP00000005328 (Len=255)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSDARP00000005328, Len=255):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSRKRALIADTFCLKRRRCAADSLTGETHDGATDIRSSIQYLMTLFSRKLFNDTLPPVVLKHQLYSLHTDKTSVDKHVND 80
WD40-rpts
Query 81 LRENGELLMFQLGFDSEAFALVFAEDYRAKVLQEEAGRKTLGAAEKFLDKLIPGCSDLSFNKDKMLKEFLFSDSEITQLV 160
WD40-rpts (________________________________________WD 1________________________________
Query 161 KSGLLTVRDAGSWWLSIPNSGRFIKYFIKGRKAVLNMVKKSKYSEILRTELEERRTTAQVKFQMKYHVHDIIGADLVECI 240
WD40-rpts ________)
Query 241 QTTSGTVLRYVDGNN 255
WD40-rpts
1 WD40-repeats found in QUERY=ENSDARP00000005328 (Len=255):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 84-169 2.78 229.58 0.04899 30.0% 34.18
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 84-169 NGELLMFQLGFDSEAFALVFAEDYRAKVLQEEAGRKTLGAAEKFLDKLIPGCSDLSFNKDKMLKEFLFSDSEITQLVKSGLLTVRD
WD40 Template TGECLRTLSGHTSGVTSVSFS--------------PD-------------GKRLVSGS----------ED---------GTIKVWD