Input parameters:

  Query = ENSDARP00000005398 (Len=318)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000005398, Len=318):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 QKSPRTGLNSALLLQKRHLGLLPPSSYSRLIHELKVSGMQRHRLEVQSSNSTSPNTDNFHLIVADSACERVFTVNDVSHG 80  
WD40-rpts                                            (________________WD 1________________)  (_

Query       81 GCKYGIMNFHGCRKGSLSVEMCDNLYFTNRKVNSVCWASVTHTDSHVLLCLVGISQTPGCVSLLPASLFSNFNPDQPGML 160 
WD40-rpts      ________________WD 2_________________)                                      (___

Query      161 CSFKISTAWSCAWCLNPQADKTFSTGLSRRVIVTDAVTGRRATYLADSDVLAQQFALRAPVLFNGCRSGEIFSIDLRQRD 240 
WD40-rpts      ______________WD 3________________)(_________________WD 4_________________)(____

Query      241 RGRMGFHGWKTSRFYQESAITSVQLLQDENYLLAADMLGKIKLWDIRVKRCVKQYEGHHNEYAYLPIHINEPEGLLLA 318 
WD40-rpts      __________________WD 5______________________)                                 

5 WD40-repeats found in QUERY=ENSDARP00000005398 (Len=318):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    39-76       5.13  326.48  0.00248       15.0%      6.08
  WD 2:  Seg  4    79-118      3.57  262.22  0.01807       20.0%     33.00
  WD 3:  Seg  9   157-195      5.69  349.58  0.00121       15.0%     46.22
  WD 4:  Seg 13   196-235      8.33  458.92  4.1e-05       22.5%     52.65
  WD 5:  Seg 17   236-285      7.86  439.15  7.5e-05       27.5%     54.70

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   39-76     --M----------Q---RHRLEVQSSNSTSPNTDNFHLIVADSACERVFTVND
   WD 2   79-118    HGG----------CKYGIMNFHGCRKGSLSVEMCDN---LYFTNRKVNSVCWA
   WD 3  157-195    -PG----------M---LCSFKISTAWSCAWCLNPQADKTFSTGLSRRVIVTD
   WD 4  196-235    AVT----------G---RRATYLADSDVLAQQFALRAPVLFNGCRSGEIFSID
   WD 5  236-285    LRQRDRGRMGFHGW---KTSRFYQESAITSVQLLQDENYLLAADMLGKIKLWD

   WD40 Template    TGE----------C---LRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD