Input parameters:

  Query = ENSDARP00000005843 (Len=338)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000005843, Len=338):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGEMEQMKKEAEGLKTQIEAARKAAHDTDMAAAAAGVAPAPRVQLKTRKTLKGHLAKIYAMHWCTDNRLMVSASQDGKLL 80  
WD40-rpts                  (____________WD 1___________)   (_________________WD 2______________

Query       81 IWDAHSGNKVNAVPLKSSWVMTCSYAPSGNLVASGGLDNMCTVYNLKTPVIKTVKELDAHTGYLSCCRFISDTEIVTSSG 160 
WD40-rpts      __)   (_________________WD 3________________)     (________________WD 4_________

Query      161 DTTCALWDLETGKQKTVFLNHIGDCMCLSLSPDNNMFISGACDSLAKLWDIRDGQCKQTFQGHTSDINAISFLPSATAFI 240 
WD40-rpts      _______)   (_________________WD 5________________)   (_________________WD 6_____

Query      241 TGSDDCTCKMYDIRADQEVICYQDSALNSGVTSVALSVSGRLIFAGYDDFNCNIWDSLKGEKVGVLSGHDNRVSCTGVPG 320 
WD40-rpts      ___________)(___________________WD 7___________________)   (_________________WD 

Query      321 DGMCVCTGSWDSFLKIWN 338 
WD40-rpts      8________________)

8 WD40-repeats found in QUERY=ENSDARP00000005843 (Len=338):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    13-41       3.41  255.70  0.02208        2.5%     28.03
  WD 2:  Seg  3    45-83       9.46  505.56  9.5e-06       30.0%     53.29
  WD 3:  Seg  7    87-125      9.16  493.01  1.4e-05       25.0%     56.91
  WD 4:  Seg 11   131-168      7.62  429.25  0.00010       27.5%     50.26
  WD 5:  Seg 15   172-210      9.69  514.87  7.1e-06       30.0%     56.17
  WD 6:  Seg 19   214-252     10.68  555.87  2.0e-06       40.0%     54.17
  WD 7:  Seg 23   253-296      8.36  460.03  3.9e-05       32.5%     55.49
  WD 8:  Seg 27   300-338      9.94  525.17  5.2e-06       35.0%     50.36

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   13-41     -------------GLKTQIEAARKAAHDTDMAAAAAG--VAPAP
   WD 2   45-83     -LK----TRKTLKGHLAKIYAMHWCTDNRLMVSASQDGKLLIWD
   WD 3   87-125    -GN----KVNAVPLKSSWVMTCSYAPSGNLVASGGLDNMCTVYN
   WD 4  131-168    -IK----TVKELDAHTGYLSCCRFISDTE-IVTSSGDTTCALWD
   WD 5  172-210    -GK----QKTVFLNHIGDCMCLSLSPDNNMFISGACDSLAKLWD
   WD 6  214-252    -GQ----CKQTFQGHTSDINAISFLPSATAFITGSDDCTCKMYD
   WD 7  253-296    IRADQEVICYQDSALNSGVTSVALSVSGRLIFAGYDDFNCNIWD
   WD 8  300-338    -GE----KVGVLSGHDNRVSCTGVPGDGMCVCTGSWDSFLKIWN

   WD40 Template    TGE----CLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD