Input parameters:

  Query = ENSDARP00000006117 (Len=555)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000006117, Len=555):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEMTYQQKIESGRWCKFSEKAVVHDDIPPDPSLALEYIDRGTCHVGTQFSKFWSQHEVTPFHTEQVSHGMNHVEGGWPET 80  
WD40-rpts                                                                                      

Query       81 ISANNDELTLRYRKKVQKDESYQQTVIETVSVMENYKQKVFEKSQVYFKDNRVVVKREDMASARIINVLRDPKKEKRAAT 160 
WD40-rpts                                                                                      

Query      161 SLSWHPVDNHKLAVAYSCVEFQRGPKNMSSDSYIWNIENNKQPEMTLKSVSPLVCLEYNLKNISILIGGSYNGQIGYWDT 240 
WD40-rpts                                             (_________________WD 1_________________)(

Query      241 RSGSQPVQISAIEHSHKDPVYKVIWLQTKIGTEAFSASTDGQVLFWDIRNMSEPTKQLILDPAKSKNLNNAFGAFSMEFD 320 
WD40-rpts      _____________________WD 2_____________________)             (_________________WD

Query      321 NTMPKFLVGTEQGLVVLCNRKLETTDEPIVCTYSGHLGPVYAVQRNPFFPKYFLTVADWTARIWSEDIRLSSIMSTKYHT 400 
WD40-rpts       3________________)          (_______________WD 4_______________)(______________

Query      401 SHLMDGCWSPVRPAVFFTVKMDGTLDVWDILLKQKDPVLSLKVCDETLYSIRVKNDSPLMCCGSQLGTVTLLKMSPNLCT 480 
WD40-rpts      _____WD 5___________________)     (_________________WD 6________________)       

Query      481 LQSNEKGLVSEMFERETKREKILEAFYKERNQMKQSCPKEEEDGRAELQELLAETETEFFEAINVEKKKIQVDEK 555 
WD40-rpts                                                                                 

6 WD40-repeats found in QUERY=ENSDARP00000006117 (Len=555):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 12   200-239      5.06  323.60  0.00271       20.0%     48.23
  WD 2:  Seg 16   240-287      5.58  345.06  0.00139       27.5%     53.37
  WD 3:  Seg 21   301-339      4.88  316.29  0.00340       17.5%     39.85
  WD 4:  Seg 24   350-385      6.50  383.16  0.00043       25.0%     46.36
  WD 5:  Seg 27   386-429      5.21  330.00  0.00222       27.5%     55.67
  WD 6:  Seg 31   435-473      5.49  341.45  0.00156       17.5%     54.65

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  200-239    -N------KQPEMTLKSVSPLVCLEY--NLKN-ISILIGGSYNGQIGYWD
   WD 2  240-287    TRSGSQPVQISAIEHSHKDPVYKVIWLQTK-I-GTEAFSASTDGQVLFWD
   WD 3  301-339    DP------AKSKNL-NNAFGAFSMEF--DN-T-MPKFLVGTEQGLVVLCN
   WD 4  350-385    ----------VCTYSGHLGPVYAVQR--NP-F-FPKYFLTVADWTARIWS
   WD 5  386-429    ED---IRLSSIMSTKYHTSHLMDGCW--SP-VRPAVFFTVKMDGTLDVWD
   WD 6  435-473    -K------DPVLSLKVCDETLYSIRV--KN-D-SPLMCCGSQLGTVTLLK

   WD40 Template    TG------ECLRTLSGHTSGVTSVSF--SP-D-GKRLVSGSEDGTIKVWD