Input parameters:

  Query = ENSDARP00000006309 (Len=410)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000006309, Len=410):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAAEIHSRPQSSRPVLLNKIEGHSDGVNAAVLIPKEDGVITVSEDRTIRVWLKRDSGQYWPSIYHTVSSPCSCVSYHHES 80  
WD40-rpts                  (_________________WD 1_________________)(___________________WD 2____

Query       81 RRIFIGQDNGAVVEFLISEDLNKMNHVKTYPAHQNRVSDLLFSLESQWLVSTGHDKSISWMSTQSGSMLGRHSFGSWASC 160 
WD40-rpts      _______________)       (_________________WD 3________________)  (_______________

Query      161 LQYDNDTQHAFVGDYSGQITLLKLDEHSCSVITTLKGHEGSVGALYWDPVHRWLFSGASDHSVIMWDIGGRQGRTLLLQG 240 
WD40-rpts      __WD 4________________)     (_________________WD 5________________)(____________

Query      241 HHEKVQALRYLPLTRQLVSCSADGGITVWNMDTTRQEAPQWLDSDSCQKCEQPFFWNIKQMWDTKTLGLRQHHCRKCGKA 320 
WD40-rpts      _______WD 6__________________)   (________________WD 7________________)   (_____

Query      321 ICGKCSSKRSTYPIMGFEFQVRMCDDCFNTIKEDDRTPLATFHEGKHSIAHMDMDPNRGLMVTCGSDRVVKIWDMTQVVG 400 
WD40-rpts      ___________WD 8________________)   (_________________WD 9________________)      

Query      401 SSVAAGFSHR 410 
WD40-rpts                

9 WD40-repeats found in QUERY=ENSDARP00000006309 (Len=410):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    13-52       9.10  490.75  1.5e-05       32.5%     52.96
  WD 2:  Seg  5    53-96       6.74  393.19  0.00031       15.0%     53.70
  WD 3:  Seg  9   104-142      8.53  467.07  3.2e-05       25.0%     54.90
  WD 4:  Seg 13   145-183      7.49  423.85  0.00012       12.5%     53.23
  WD 5:  Seg 17   189-227      9.34  500.46  1.1e-05       30.0%     56.66
  WD 6:  Seg 21   228-270      9.04  488.23  1.6e-05       37.5%     59.97
  WD 7:  Seg 25   274-311      5.21  329.79  0.00223        5.0%     49.75
  WD 8:  Seg 29   315-352      6.16  368.96  0.00066       15.0%     44.45
  WD 9:  Seg 33   356-394      8.84  479.95  2.1e-05       20.0%     57.56

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   13-52     RP---V----LLNKIEGHSDGVNAAVLIPKEDGVITVSEDRTIRVWL
   WD 2   53-96     KR---DSGQYWPSIYHTVSSPCSCVSYHHESRRIFIGQDNGAVVEFL
   WD 3  104-142    -M---N----HVKTYPAHQNRVSDLLFSLESQWLVSTGHDKSISWMS
   WD 4  145-183    -S---G----SMLGRHSFGSWASCLQYDNDTQHAFVGDYSGQITLLK
   WD 5  189-227    -C---S----VITTLKGHEGSVGALYWDPVHRWLFSGASDHSVIMWD
   WD 6  228-270    IGGRQG----RTLLLQGHHEKVQALRYLPLTRQLVSCSADGGITVWN
   WD 7  274-311    -T---R----QEAPQWLDSDSC-QKCEQPFFWNIKQMWDTKTLGLRQ
   WD 8  315-352    -R---K----CGKAICGKCSSKRST-YPIMGFEFQVRMCDDCFNTIK
   WD 9  356-394    -R---T----PLATFHEGKHSIAHMDMDPNRGLMVTCGSDRVVKIWD

   WD40 Template    TG---E----CLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD