Accession: ENSDARP00000006680 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = ENSDARP00000006680 (Len=496)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000006680, Len=496):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSQFGFENDIHNVLRLDMPITNAPMARWQRKASTSNSSSTNSISPNKSVNRSVSLSKTPSKTPGKNGKTQNTPSKAGGDR 80  
WD40-rpts                                                                                      

Query       81 YIPTRNNKQLDVASFLISKENEPVEESEPSTAPNQKAWSMSLNGYDIEEAKILHLGGKPLYAPEGYQNNLKVLYSQVPTP 160 
WD40-rpts                                                              (____________________WD 

Query      161 VSVKKSRYISSYPERILDAPDIRNDFYLNLMDWGRQNVLAVGLANQVYLWDAGEGDIVLLKKMEDDNEYICSVSWSKDGN 240 
WD40-rpts      1___________________)                              (___________________WD 2_____

Query      241 FLAIGTSDCKVELWDVQYQKRLRSMDGHSARVGCLSWNDHILSSGSRSGLIHQHDVRVADHHIFTFGGHTQEVCGLTWSP 320 
WD40-rpts      ______________)   (________________WD 3_______________)    (_________________WD 

Query      321 DGRYLASGGNDNMVYIWPMTTGSENQAIHALSEHQGAVKALAWCPWQPNILASGGGTSDRHIRIWNASSGSCISSLDTCS 400 
WD40-rpts      4________________)      (__________________WD 5__________________)   (__________

Query      401 QVSSLVFAPNYKELVSGHGFAHDKVVIWKYPSFAKVTEHEGHEARILNLALSPDGSTLASIAADETIRLWKCFEKEKDAA 480 
WD40-rpts      _______WD 6_________________)   (_________________WD 7________________)         

Query      481 KKPKQASGRIVQQSIR 496 
WD40-rpts

7 WD40-repeats found in QUERY=ENSDARP00000006680 (Len=496):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   137-181      2.90  234.34  0.04242       17.5%      0.87
  WD 2:  Seg  8   212-255      8.32  458.23  4.1e-05       35.0%     56.30
  WD 3:  Seg 12   259-295      6.50  383.06  0.00043       32.5%     53.61
  WD 4:  Seg 16   300-338      9.30  498.70  1.2e-05       35.0%     53.71
  WD 5:  Seg 20   345-386      6.17  369.36  0.00065       22.5%     37.12
  WD 6:  Seg 23   390-429      5.48  340.83  0.00159       35.0%     51.46
  WD 7:  Seg 27   433-471      8.99  486.14  1.7e-05       30.0%     55.27

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  137-181    -GK----PLYAPEGYQNNLKVLYSQVPTPVSVKKSRYIS---SYP--ERILDAPD
   WD 2  212-255    AGEGDIVLLKKMEDDNEYICSV------SWSKDGNFLAI---GTS--DCKVELWD
   WD 3  259-295    -QK----RLRSMDGHSARVGCL------SW--NDHILSS---GSR--SGLIHQHD
   WD 4  300-338    -DH----HIFTFGGHTQEVCGL------TWSPDGRYLAS---GGN--DNMVYIWP
   WD 5  345-386    -NQ----AIHALSEHQGAVKAL------AWCPWQPNILASGGGTS--DRHIRIWN
   WD 6  390-429    -GS----CISSLDTC-SQVSSL------VFAPNYKELVS---GHGFAHDKVVIWK
   WD 7  433-471    -FA----KVTEHEGHEARILNL------ALSPDGSTLAS---IAA--DETIRLWK

   WD40 Template    TGE----CLRTLSGHTSGVTSV------SFSPDGKRLVS---GSE--DGTIKVWD