Input parameters:
Query = ENSDARP00000006973 (Len=458)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSDARP00000006973, Len=458):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MLCHSRCLSRSLGRSITALRQGNSVLARRATSGIAASQCVSFQNSPRCETRSSVYQIRYFKTTAAHRNEVITVKTPAFAE 80
WD40-rpts
Query 81 SVTEGDVRWEKAVGDSVAEDEVVCEIETDKTSVQVPSPAAGVIEELLVPDGGKVEGGTPLFKLKKGAGAVKTAAAAAAPP 160
WD40-rpts (_________________WD 1_________________)
Query 161 PAAETPAPAAPAPAAAPAGGPIPSSMPPVPAVPAQPIQAKPVSAIKPTAAAPAAAAADTGAKAPRSEHRVKMNRMRLRIA 240
WD40-rpts
Query 241 QRLKEAQNTCAMLTTFNEVDMSNITEMRTHYKDAFLKKHGIKLGFMSAFVKAAAYALTDQPAVNAVIDDTTKEIVYRDYV 320
WD40-rpts
Query 321 DISVAVATPKGLVVPVIRGVEGMNFADIEKTINELGEKARKNELAVEDMDGGTFTISNGGVFGSMFGTPIINPPQSAILG 400
WD40-rpts
Query 401 MHGIFDRPVAIAGKVEVRPMMYVALTYDHRLIDGREAVTFLRKIKSVVEDPRVLLLDM 458
WD40-rpts
1 WD40-repeats found in QUERY=ENSDARP00000006973 (Len=458):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 4 108-147 3.02 239.30 0.03647 20.0% 24.82
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 108-147 TDKTSVQVPSPAAGVIEELLVPDGGKVEGGTPLFKLKKGA
WD40 Template TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD