Input parameters:

  Query = ENSDARP00000008006 (Len=1171)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000008006, Len=1171):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRVKEILRTATQAWSPARQHPAYLALGTAAQQLDASFNTSSALEIFDMDFSDTSMDMKLRGTLATSNRFHSLIWVAFGMD 80  
WD40-rpts        (____________________WD 1___________________)                 (_______________

Query       81 VQPSSGRLIGGSENGSVTVFNPDVILTAGEDAVIGQSNKHTGPVRALDFNRFQSNLIASGANDSEIYIWDLNNFSNPMTP 160 
WD40-rpts      _WD 2_______________)         (_________________WD 3_________________)(_________

Query      161 GTKSQPAEDVSVVAWNSQVQHILASANPSGKAVVWDLRKNEPIIKISDHSNRMHCSGMLWHPDVATQLVLASEDDRLPVI 240 
WD40-rpts      ___________WD 4____________________)   (____________________WD 5________________

Query      241 QMWDLRFATSPLKVLENHTRGILSISWSQADPELLLSSGKDNRILCWNPNTGEVIYELPTANQWCFDVQWCPRNPALLSA 320 
WD40-rpts      ___)    (_________________WD 6_________________)   (_________________WD 7_______

Query      321 ASFDGRISVYSVMGGRLQQQQHSTVDQISASFDTNDPFGMGQTLPPLQVPQAAVETTIIPPLKKPPKWVRRPVGASFAFG 400 
WD40-rpts      __________)   (_________________WD 8________________)                           

Query      401 GKLVTFENPNVAPPQQQQPANPLPRQVHVSQVTTETEFLQRSTELQMTLQSGSFSSFCHSKIQSAPTDAEQDIWRFLMVN 480 
WD40-rpts                                                                                      

Query      481 FEDEARVKFLRLLGFSKDELQRKISACLGRKLQPNGLDVNDLAEKMQTLSDQRADECAGAADGLPGRESPADFFSQLPKK 560 
WD40-rpts                                                                                      

Query      561 EKDKQPFQIPVSSDTDGLISQALLVGNFEGAVDLCLNDGRFAEAILLSISGGEELLKKTQQRYLQRQTNSISMLISSVVT 640 
WD40-rpts                                                                                      

Query      641 QNWRDIVQSCELDNWKEALAALLTYANPEEFASLCDTLGSRLEAGGSEKLCLQACLCFICSGNIERLVDCWTLQRDCSSP 720 
WD40-rpts                                                                                      

Query      721 LALEDLVEKVMILRKSIERLRNIEVCVRSSALTQKLIQYSSILASQGSLSAALNYLPSDSDQAAVRMLRDRLSHAKGEIQ 800 
WD40-rpts                                                                                      

Query      801 QKPSAPAGGAKPAPNTHTPAAHTTAPYPSSGAPQMPRLFSPQTGPEPPAGATTHTPRPAYTQHPATAPGFHPFPPAAPQG 880 
WD40-rpts                                                                                      

Query      881 APGGFFTPQMPSSSLAGPSMPPSSPPGPMMPAGVPMMMPTPPAPGFLSPTSLPGGPRFPGSAHTQGPAPPPTGAYPSLGA 960 
WD40-rpts                                                                                      

Query      961 AGYPQGGPGAPAAKSFSGAPVPPPPSGAQDGWNDPPAVRAGQRKKKLPENYTPPAPITAPVMGFPAEAPVLQDRVQVPPG 1040
WD40-rpts                                                                                      

Query     1041 APQEPSIQSIQQLPAERVEQKEIPAEHMILKTTFSSLVQRCQLAAADPQTKRKLDDASKRLENLYDKLRDQSLSPSILGG 1120
WD40-rpts                                                                                      

Query     1121 LHEISRCVSARSYVQGLEVHTQVVSSSNFSEISAFMPVLKVLMTIANKLAV 1171
WD40-rpts                                                         

8 WD40-repeats found in QUERY=ENSDARP00000008006 (Len=1171):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     3-47       3.40  255.00  0.02256       15.0%     29.18
  WD 2:  Seg  5    65-101      4.47  299.34  0.00574       25.0%     33.07
  WD 3:  Seg  8   111-150      6.15  368.68  0.00067       25.0%     47.11
  WD 4:  Seg 11   151-196      3.83  272.74  0.01307       27.5%     39.55
  WD 5:  Seg 14   200-244      3.78  270.75  0.01390       32.5%     49.76
  WD 6:  Seg 18   249-288      6.98  403.02  0.00023       35.0%     42.35
  WD 7:  Seg 21   292-331      5.41  338.26  0.00172       27.5%     53.59
  WD 8:  Seg 24   335-373      3.36  253.62  0.02354        5.0%      2.94

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    3-47     VKE-----ILRTATQAWSPARQHPA--YLALG-TA-AQ-QLDASFNTSS---ALEIFD
   WD 2   65-101    TSN-----RFHS-----LIW---VA--FGMDV-QP-SS-GRLIGGSENG---SVTVFN
   WD 3  111-150    -DA-----VIGQ-----SNKHTGPV--RALDF-NRFQS-NLIASGANDS---EIYIWD
   WD 4  151-196    LNNFSNPMTPGT-----KSQPAEDV--SVVAWNSQ-VQ-HILASANPSG---KAVVWD
   WD 5  200-244    -NE-----PIIK-----ISDHSNRMHCSGMLW-HP-DVATQLVLASEDDRLPVIQMWD
   WD 6  249-288    -TS-----PLKV-----LENHTRGI--LSISW-SQADP-ELLLSSGKDN---RILCWN
   WD 7  292-331    -GE-----VIYE-----LPTANQWC--FDVQW-CPRNP-ALLSAASFDG---RISVYS
   WD 8  335-373    -GR-----LQQQ-----QHSTVDQI--SASFD-TN-DP-FGMGQTLPPL---QVPQAA

   WD40 Template    TGE-----CLRT-----LSGHTSGV--TSVSF-SP-DG-KRLVSGSEDG---TIKVWD