Input parameters:

  Query = ENSDARP00000008668 (Len=896)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000008668, Len=896):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSMSANKKGSVIFSGFRALGLYSNHLAHVVRFHKKHREFYVVTAVGQCFHTYNVKKLGIVAVSNALPEDISSVTADCML 80  
WD40-rpts                                                                                      

Query       81 VYAAYGKLISAFARSREVVHTYTGHQADVHLLLPFGNHLISVDKDNVVIIWDVESEDTYLQISYDKASFEVSALMHPSTY 160 
WD40-rpts                     (________________WD 1_______________)   (__________________WD 2__

Query      161 LNKILFGSSQGSLQLWNIKSNKLLFTFSGWSAAVTVLQQTPAVDVVGVGLASGQIIIHNIKFDETLMKFQQDWGPITALS 240 
WD40-rpts      ________________)   (_________________WD 3________________)   (_________________

Query      241 FRTDGHPIMASGSPIGHIGLWDLEEKKLVSQMRDAHTTAIAGLTFLQNEPLLITNGADNAIRVWIFDVAGGDGRLLRQRM 320 
WD40-rpts      WD 4_________________)(___________________WD 5__________________)       (_______

Query      321 GHSAPPTKIRHYDQSGLNILSAGQDGTLQSFSTVHERFNKSLGHGTLNKAKAKKKGVKYDTAKLPSITTFASETARQSDW 400 
WD40-rpts      __________WD 6_________________)            (_________________WD 7______________

Query      401 DGIIACHRGFLMTTSWNYQKGSMGAHKLEPERFNRNRSLNVHATAVDISSCGNFAVIALSSGHIDVYNMQSGLHRGHYGE 480 
WD40-rpts      __)                          (_________________WD 8________________)(___________

Query      481 DKAHEGPVRGVAVDALNQLTFSVGADHLLKIWKFKSKEHLHTHRLPAAPASSLLHRDSGMLAIALDVFAIHILDVETRRI 560 
WD40-rpts      _________WD 9___________________)   (________________WD10________________)   (__

Query      561 VRKFSGHRGQINDMTFSPDGRWLITASMDCTIRTWDLPSGSLVDCFLVEAAAVSVSLSPTGNFLASSHVDGLGVYLWSNN 640 
WD40-rpts      _______________WD11________________)   (_________________WD12________________)  

Query      641 TLCSLVSLRPLPADYEPTVIMLPGNCPSKDTEEEEVLDSDSSEMAEYISPAQLDEHLVTLSLLPDSRWKNLLHLDIIKKK 720 
WD40-rpts       (_________________WD13________________)                                        

Query      721 NKPKEPPKVPKAAPFFIPTIPGLVPQFSLPNTPSEAQSKVVNLGVLAQKSNFYIELENAIESNSYEEPVKLLRELGPSAI 800 
WD40-rpts                                                                                      

Query      801 ETELRALSPDMGGDVGVMKSFLKMISCILKSKKDFDLAQAYLALFLKLHLRLISDEPELMEEAERVSAQLEETWMCIQTL 880 
WD40-rpts                                                                                      

Query      881 LNQSICLLSYIKSALL 896 
WD40-rpts                      

13 WD40-repeats found in QUERY=ENSDARP00000008668 (Len=896):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 10    96-132      6.28  373.87  0.00057       30.0%     52.09
  WD 2:  Seg 14   136-177      5.24  331.02  0.00215       15.0%     58.38
  WD 3:  Seg 18   181-219      7.31  416.72  0.00015       25.0%     59.93
  WD 4:  Seg 22   223-262      7.24  413.76  0.00017       35.0%     56.45
  WD 5:  Seg 26   263-305      7.33  417.29  0.00015       22.5%     53.90
  WD 6:  Seg 30   313-352      7.01  404.25  0.00022       27.5%     52.65
  WD 7:  Seg 35   365-403      2.83  231.61  0.04608        7.5%     35.53
  WD 8:  Seg 40   430-468      6.13  367.79  0.00069       22.5%     48.97
  WD 9:  Seg 43   469-513      6.72  392.25  0.00032       20.0%     48.41
  WD10:  Seg 47   517-554      4.99  320.62  0.00297       20.0%     53.36
  WD11:  Seg 51   558-596      9.82  520.35  6.0e-06       40.0%     57.34
  WD12:  Seg 55   600-638      5.27  332.24  0.00207       32.5%     54.21
  WD13:  Seg 59   642-680      5.20  329.28  0.00227       12.5%     48.47

Multiple sequence alignment of 13 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   96-132    -RE---VVH-----TYTGHQADVHL---L---LPFGN-HLISVDKDNV-VIIWD
   WD 2  136-177    -ED---TYL-----QISYDKASFEVSA-LMHPSTYLN-KILFGSSQGS-LQLWN
   WD 3  181-219    -NK---LLF-----TFSGWSAAVTVLQ-Q---TPAVD-VVGVGLASGQ-IIIHN
   WD 4  223-262    -DE---TLM-----KFQQDWGPITALS-F---RTDGHPIMASGSPIGH-IGLWD
   WD 5  263-305    LEEKKLVSQ-----MRDAHTTAIAGLT-F---LQNEP-LLITNGADNA-IRVWI
   WD 6  313-352    -GR---LLR-----QRMGHSAPPTKIRHY---DQSGL-NILSAGQDGT-LQSFS
   WD 7  365-403    -GT---LNK-----AKAKKKGVKYDTA-K---LPSIT-TFASETARQS-DWDGI
   WD 8  430-468    -PE---RFN-----RNRSLNVHATAVD-I---SSCGN-FAVIALSSGH-IDVYN
   WD 9  469-513    MQS---GLHRGHYGEDKAHEGPVRGVA-V---DALNQ-LTFSVGADHL-LKIWK
   WD10  517-554    -KE---HLH-----THRLPAA-PASSL-L---HRDSG-MLAIALDVFA-IHILD
   WD11  558-596    -RR---IVR-----KFSGHRGQINDMT-F---SPDGR-WLITASMDCT-IRTWD
   WD12  600-638    -GS---LVD-----CFLVEAAAV-SVS-L---SPTGN-FLASSHVDGLGVYLWS
   WD13  642-680    -LC---SLV-----SLRPLPADYEPTV-I---MLPGN-CPSKDTEEEE-VLDSD

   WD40 Template    TGE---CLR-----TLSGHTSGVTSVS-F---SPDGK-RLVSGSEDGT-IKVWD