Input parameters:

  Query = ENSDARP00000008672 (Len=853)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSDARP00000008672, Len=853):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAAGALNLGKLMGEKMGLPCEKDTDDRPGHFNHEGKEESEDSKPKKIKADTQLSEQAPCSQVSSGVDQENSFNVEQTKKN 80  
WD40-rpts                                                                                      

Query       81 EELKAKTPAKRRKKEIIPQTTPQQDVPALTDTSELASSGRPKRRAAKVALDYLHSLAKDIGTPSESSTPARPKSGEAVVT 160 
WD40-rpts                                                                                      

Query      161 SQKKKPARSRGVKRKAPDSDSDCDGDEDFAPEKDDVEAESDEEDSEDSEPDVSLTMPRRGKQARGSYQCLLPNGLANNVM 240 
WD40-rpts                                                                                      

Query      241 EPVWNSFSRHKKFRDENFSPWVFPEWIPSARDWHFLSNSEAEKYLPQEKESASFTFTREKINQPIQLQTVKRFESLPHHP 320 
WD40-rpts                                                                                      

Query      321 ERWDSLFFVGGPVRAMEWCPCPDGAEKKQYAAIYCHKGMDDTHQITKLYSGPALLQLWDLGDLQCKERPSTTPHLAYALA 400 
WD40-rpts                                                                                      

Query      401 IDDGYIWNIKWCPAGAWELPSTSRKAPQMPRLGVLAATFANGTIGVYSLPHPEALEKHYQSKGEGSRSPLICRVKKLLSL 480 
WD40-rpts       (_____________________WD 1____________________)                                

Query      481 KMGSNQADHKAQSGVCFALDWLYVKPHNILAAGFYDGLVGLWDLSSKSTLLRVRCPDGGVSLYPYHCFHAHDENIRTLSW 560 
WD40-rpts        (__________________WD 2_________________)(__________________________WD 3______

Query      561 CKASSHLLVTVGDDRMAKMWDVRKTHTPLLAVKRCLSPEVYWPLLWSGFLMAQECCFATYGQHGIHYFDSGYLGIKPFFV 640 
WD40-rpts      ____________________)                                                    (______

Query      641 CPRKATIWSLSMSDWINAFAIVDNGGDCLFSCLPEMDMDPSNLRRRRFSVYRTDMVQFEAGQRTAGEEQAEEETEDKTSI 720 
WD40-rpts      ___________WD 4________________)(____________________WD 5____________________)  

Query      721 PGREPLTYRGAVKKNFLHFHDLDMGNFSKCENRPMMKHLQQHELKGAAKVDQMPLSALYKVRFNPNMDAYNWLLSGGQSG 800 
WD40-rpts       (_________________WD 6________________)                                        

Query      801 LVRVNCARGLSCSIMMKELREAQAQFSAMFQSREPDDSVTAVRHSTADTVQVH 853 
WD40-rpts                                                           

6 WD40-repeats found in QUERY=ENSDARP00000008672 (Len=853):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   402-448      4.06  282.25  0.00975       17.5%     28.68
  WD 2:  Seg 10   483-523      5.35  335.57  0.00187       17.5%     39.20
  WD 3:  Seg 13   524-581      4.93  318.33  0.00319       20.0%     45.92
  WD 4:  Seg 20   634-672      5.07  323.93  0.00268       12.5%     47.87
  WD 5:  Seg 24   673-718      3.24  248.49  0.02755       12.5%      7.26
  WD 6:  Seg 25   722-760      2.82  231.03  0.04690       12.5%      6.44

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  402-448    DDG-----------------Y------IWNIKWCPAGAWELPSTSRKAPQMP-RL--GVLAATFANGTIGVYS
   WD 2  483-523    -GS-----------------N------QADHK-------AQSGVCFALDWLY-VKPHNILAAGFYDGLVGLWD
   WD 3  524-581    LSSKSTLLRVRCPDGGVSLYP------YHCFH-------AHDENIRTLSWCKASS--HLLVTVGDDRMAKMWD
   WD 4  634-672    -GI-----------------K------PFFVC-------PRKATIWSLSMSD-WI--NAFAIVDNGGDCLFSC
   WD 5  673-718    LPE-----------------MDMDPSNLRRRR-------FSVYRTDMVQFEA-GQ--RTAGEEQAEEETEDKT
   WD 6  722-760    -GR-----------------E------PLTYR-------GAVKKNFLHFHDL-DM--GNFSKCENRPMMKHLQ

   WD40 Template    TGE-----------------C------LRTLS-------GHTSGVTSVSFSP-DG--KRLVSGSEDGTIKVWD